simplify pipeline and allow change of python version dynamically #4
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # See the NOTICE file distributed with this work for additional information | ||
| # regarding copyright ownership. | ||
| # | ||
| # Licensed under the Apache License, Version 2.0 (the "License"); | ||
| # you may not use this file except in compliance with the License. | ||
| # You may obtain a copy of the License at | ||
| # | ||
| # http://www.apache.org/licenses/LICENSE-2.0 | ||
| # | ||
| # Unless required by applicable law or agreed to in writing, software | ||
| # distributed under the License is distributed on an "AS IS" BASIS, | ||
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| # See the License for the specific language governing permissions and | ||
| # limitations under the License. | ||
| name: "CI" | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| paths: | ||
| - '.github/actions/**' | ||
| - '.github/workflows/ci.yml' | ||
| - 'src/ensembl/**' | ||
| - 'tests/**' | ||
| - 'pyproject.toml' | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| paths: | ||
| - '.github/actions/**' | ||
| - '.github/workflows/ci.yml' | ||
| - 'src/ensembl/**' | ||
| - 'tests/**' | ||
| - 'pyproject.toml' | ||
| permissions: write-all | ||
| defaults: | ||
| run: | ||
| working-directory: ./ | ||
| env: | ||
| PYTHON_VERSION: "3.9" | ||
| jobs: | ||
| pylint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: ./.github/actions/python_build | ||
| - name: Run pylint | ||
| run: | | ||
| pylint --rcfile pyproject.toml src/ensembl | ||
| pylint --rcfile pyproject.toml tests | ||
| mypy: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: ./.github/actions/python_build | ||
| - name: Run mypy | ||
| run: | | ||
| mypy --config-file pyproject.toml src/ensembl | ||
| mypy --config-file pyproject.toml tests | ||
| black: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: ./.github/actions/python_build | ||
| - name: Run black | ||
| run: | | ||
| black --config pyproject.toml --check . | ||
| pytest: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: ./.github/actions/python_build | ||
| - name: Run pytest with coverage | ||
| run: | | ||
|
Check failure on line 92 in .github/workflows/ci.yml
|
||
| coverage run -m pytest --junitxml=./reports/test-results-${{ PYTHON_VERSION }}.xml | ||
| coverage xml -o ./reports/coverage.xml | ||
| coverage report -m | ||
| - name: Add coverage reports | ||
| id: coverage_report | ||
| uses: MishaKav/pytest-coverage-comment@main | ||
| with: | ||
| pytest-xml-coverage-path: ./reports/coverage.xml | ||
| junitxml-path: ./reports/test-results-${{ PYTHON_VERSION }}.xml | ||
| - name: Create coverage badge | ||
| uses: schneegans/[email protected] | ||
| with: | ||
| auth: ${{ secrets.GIST_SECRET }} | ||
| gistID: 019787fcdec96f05d6c53367bbf2b949 | ||
| filename: ensembl-utils_badge.json | ||
| label: Coverage | ||
| message: ${{ steps.coverage_report.outputs.coverage }} | ||
| color: ${{ steps.coverage_report.outputs.color }} | ||
| if: ${{ github.event_name == 'push' }} | ||
