Expand genomes results to include assembly and linked objects
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| # Workflow name | |
| name: PyTest, Black, Pylint and Mypy | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on pull request (on main and develop only) events | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "tests" | |
| tests: | |
| # The type of runner that the job will run on and timeout in minutes | |
| name: Run Python Tests, Black formatter, Pylint and Mypy | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| # Include a strategy matrix in order to allow the job to run multiple times with different versions of Python | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9] | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out our repository under $GITHUB_WORKSPACE, so our job can access it | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| # Set up Python version from the matrix | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Runs a set of commands installing Python dependencies using the runners shell (Run a multi-line script) | |
| - name: Install Python dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| pip3 install -r requirements-dev.txt | |
| # Run unit tests | |
| - name: Test with pytest | |
| run: | | |
| export META_CLASSIFIER_PATH=$PWD/docs/metadata_classifiers/ | |
| pytest --exitfirst --verbose --failed-first | |
| # Check code has been formatted | |
| - name: Run Black code formatter | |
| run: | | |
| black . --check --verbose --diff --color | |
| # Run Pylint | |
| - name: Run Pylint | |
| run: | | |
| pylint $(git ls-files '*.py') --fail-under=9.5 | |
| # Run Mypy | |
| - name: Run Mypy type checker | |
| run: | | |
| mypy graphql_service |