Merge pull request #4303 from xchang1/fix-lr-params

Fix command line downsmapling parameters to match what they're doing
vgteam · Jun 3, 2024 · 4ee2592 · 4ee2592 · adamnovak · Jun 3, 2024
2 parents 8e13416 + b939bfb
commit 4ee2592
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/src/subcommand/giraffe_main.cpp b/src/subcommand/giraffe_main.cpp
@@ -184,16 +184,16 @@ static std::unique_ptr<GroupedOptionGroup> get_options() {
         "use maximum of number minimizers calculated by READ_LENGTH / INT and --max-min"
     );
     comp_opts.add_range(
-        "downsample-window-count",
+        "downsample-window-length",
         &MinimizerMapper::minimizer_downsampling_max_window_length,
         MinimizerMapper::default_minimizer_downsampling_max_window_length,
-        "downsample minimizers with windows of length read_length/INT, 0 for no downsampling"
+        "maximum window length for downsampling"
     );
     comp_opts.add_range(
-        "downsample-window-length",
+        "downsample-window-count",
         &MinimizerMapper::minimizer_downsampling_window_count,
         MinimizerMapper::default_minimizer_downsampling_window_count,
-        "maximum window length for downsampling"
+        "downsample minimizers with windows of length read_length/INT, 0 for no downsampling"
     );
     comp_opts.add_range(
         "distance-limit", 'D',