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Update citations (#1257)
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Co-authored-by: bgruening <[email protected]>
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github-actions[bot] and bgruening authored May 17, 2024
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18 changes: 12 additions & 6 deletions _bibliography/citations-eu.bib
Original file line number Diff line number Diff line change
Expand Up @@ -6544,16 +6544,18 @@ @article{mauer_genomics_2021
year = {2021}
}

@article{mccluskey_predicting_nodate,
@article{mccluskey_predicting_2024,
author = {McCluskey, Kevin and Brown, Daren and Bredeweg, Erin and Baker, Scott},
doi = {10.4148/1941-4765.2183},
issn = {1941-4765},
journal = {Fungal Genetics Reports},
keywords = {{\textgreater}UseGalaxy.eu},
month = {April},
number = {1},
title = {Predicting the {Identities} of su(met-2) and met-3 in {Neurospora} crassa by {Genome} {Resequencing}},
url = {https://newprairiepress.org/fgr/vol67/iss1/3},
volume = {67}
volume = {67},
year = {2024}
}

@article{mcdonald_ultraviolet_2022,
Expand Down Expand Up @@ -7361,11 +7363,13 @@ @article{niemoller_bisulfite-free_2021
year = {2021}
}

@misc{noauthor_candidatus_nodate,
@misc{noauthor_candidatus_2024,
keywords = {{\textgreater}UseGalaxy.eu},
month = {April},
title = {Candidatus {Methanosphaera} massiliense sp. nov., a methanogenic archaeal species found in a human fecal sample and prevalent in pigs and red kangaroos {\textbar} {Microbiology} {Spectrum}},
url = {https://journals.asm.org/doi/full/10.1128/spectrum.05141-22},
urldate = {2024-05-17}
urldate = {2024-05-17},
year = {2024}
}

@article{noauthor_characterization_2023,
Expand Down Expand Up @@ -11546,7 +11550,7 @@ @article{zhang_replication_2022
year = {2022}
}

@article{zhao_rrm_nodate,
@article{zhao_rrm_2024,
abstract = {Gene expression is regulated at multiple levels, including RNA processing and DNA methylation/demethylation. How these regulations are controlled remains unclear. Here, through analysis of a suppressor for the OsEIN2 over-expressor, we identified an RNA recognition motif protein SUPPRESSOR OF EIN2 (SOE). SOE is localized in nuclear speckles and interacts with several components of the spliceosome. We find SOE associates with hundreds of targets and directly binds to a DNA glycosylase gene DNG701 pre-mRNA for efficient splicing and stabilization, allowing for subsequent DNG701-mediated DNA demethylation of the transgene promoter for proper gene expression. The V81M substitution in the suppressor mutant protein mSOE impaired its protein stability and binding activity to DNG701 pre-mRNA, leading to transgene silencing. SOE mutation enhances grain size and yield. Haplotype analysis in c. 3000 rice accessions reveals that the haplotype 1 (Hap 1) promoter is associated with high 1000-grain weight, and most of the japonica accessions, but not indica ones, have the Hap 1 elite allele. Our study discovers a novel mechanism for the regulation of gene expression and provides an elite allele for the promotion of yield potentials in rice.},
author = {Zhao, Rui and Wu, Wen-Ai and Huang, Yi-Hua and Li, Xin-Kai and Han, Jia-Qi and Jiao, Wu and Su, Yin-Na and Zhao, He and Zhou, Yang and Cao, Wu-Qiang and Zhang, Xun and Wei, Wei and Zhang, Wan-Ke and Song, Qing-Xin and He, Xin-Jian and Ma, Biao and Chen, Shou-Yi and Tao, Jian-Jun and Yin, Cui-Cui and Zhang, Jin-Song},
copyright = {© 2024 The Authors. New Phytologist © 2024 New Phytologist Foundation},
Expand All @@ -11555,12 +11559,14 @@ @article{zhao_rrm_nodate
journal = {New Phytologist},
keywords = {{\textgreater}UseGalaxy.eu, RNA-binding protein, alternative splicing, grain size, methylation, rice},
language = {en},
month = {April},
note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.19686},
number = {n/a},
title = {An {RRM} domain protein {SOE} suppresses transgene silencing in rice},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/nph.19686},
urldate = {2024-05-17},
volume = {n/a}
volume = {n/a},
year = {2024}
}

@article{zhu_bas_2024,
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