Create pathogfair posts for Bluesky

[arash77]

No description provided.

[wm75]

@bebatut bluesky wasn't quite ready when you posted this first. Now it is we think and I've reformatted things slightly for nice threading there with just 300 chars per post.

Hope you find it ok.

[bebatut]

Thanks for doing it

[bebatut]

@bebatut bluesky wasn't quite ready when you posted this first. Now it is we think and I've reformatted things slightly for nice threading there with just 300 chars per post.

Hope you find it ok.

Thanks for doing it. I also had to do some reformatting when I posted on Bluesky: https://bsky.app/profile/did:plc:tdaezrcimg3xiw4blr7spta5/post/3kwwps3c75u2f

[wm75]

Ok then, I don't think we need to post this twice over there, but we know now that at least preview generation for bluesky works well and that outdated previews get collapsed when new ones get generated in a PR :-)

[bebatut]

Ok then, I don't think we need to post this twice over there, but we know now that at least preview generation for bluesky works well and that outdated previews get collapsed when new ones get generated in a PR :-)

We could as it will be posted by Galaxy (more power than mine 😅 )

[wm75]

We could as it will be posted by Galaxy (more power than mine 😅 )

Whatever power you can currently have on bluesky ;-)
Just make edits as needed then and tell us when it's good to go.

[github-actions]

👋 Hello! I'm your friendly social media assistant. Below are the previews of this post:
posts/2024/2024-07-16-pathogfair-preprint.md

bluesky-galaxyproject

🚀 Exciting news in pathogen detection!
Our new PathoGFAIR preprint introduces FAIR and adaptable (meta)genomics workflows for detecting and tracking foodborne pathogens. This project started nearly three years ago as a collaboration with Biolytix, a swiss SME. 🌟 (1/11)

📝 Preprint: https://www.biorxiv.org/content/10.1101/2024.06.26.600753v1
🔗 Blogpost: https://galaxyproject.org/news/2024-07-08-pathogfair-preprint/ (2/11)

🏁 Project Origins
The journey began with funding from EOSC-Life for Industry Collaboration to modernize and validate Biolytix's bioinformatic pipelines. The goal? To make pathogen detection workflows accessible and scalable via the Galaxy platform. 🌐 (3/11)

🔗 Project Background: https://galaxyproject.org/news/2021-12-08-pathogen-detection-eosc-life-grant/ (4/11)

🔍 What's in PathoGFAIR?
PathoGFAIR consists of 5 workflows:
🔗 Workflows: https://usegalaxy-eu.github.io/PathoGFAIR/#how-to-find-pathogfair-workflows (5/11)

• Preprocessing
• Taxonomy Profiling and Visualization
• Gene-based Pathogen Identification with assembly, AMR and VF gene detection
• Allele-based Pathogen Identification with variant calling
• PathoGFAIR Samples Aggregation and Visualisation including phylogenetic analysis (6/11)

🌟 Embracing FAIR Principles
These workflows adhere to FAIR (Findable, Accessible, Interoperable, Reusable) principles, ensuring they are easy to find (via WorkflowHub and Dockstore), share, adapt, and integrate with other data and tools for the benefit of pathogen research. (7/11)

📚 Training Material Available
To support users, a comprehensive tutorial has been developed. It guides users through the workflows, ensuring they can effectively utilize the tools for their research and public health initiatives. (8/11)

🔗 Tutorial: https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.html (9/11)

🌍 Impact
PathoGFAIR is set to improve pathogen tracking, providing robust tools for researchers and public health officials worldwide. By improving detection capabilities, we can better protect public health. 🌎🔬 (10/11)

📝 Preprint: https://www.biorxiv.org/content/10.1101/2024.06.26.600753v1
🔗 Blogpost: https://galaxyproject.org/news/2024-07-08-pathogfair-preprint/

@bebatut.bsky.social
#metagenomics #pathogen #UseGalaxy (11/11)

[wm75]

is that how you mention people on bluesky? with their full id (even though there is only bsky.social)?

[arash77]

is that how you mention people on bluesky? with their full id (even though there is only bsky.social)?

Yes!