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Minor curations and code updates (biopragmatics#1178)
* Add pattern and URI format to CRediT * Add wikidata link for Publons Researcher ID * Add Mastodon prefix * Update bioregistry.json * Use UV for tests * Update mypy
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Original file line number | Diff line number | Diff line change |
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|
@@ -22123,14 +22123,19 @@ | |
"uri_format": "https://crates.io/crates/$1" | ||
}, | ||
"credit": { | ||
"contact": { | ||
"email": "[email protected]", | ||
"name": "Liz Allen", | ||
"orcid": "0000-0002-9298-3168" | ||
}, | ||
"contributor": { | ||
"email": "[email protected]", | ||
"github": "cthoyt", | ||
"name": "Charles Tapley Hoyt", | ||
"orcid": "0000-0003-4423-4370" | ||
}, | ||
"description": "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output.", | ||
"example": "Software", | ||
"example": "software", | ||
"fairsharing": { | ||
"abbreviation": "CRediT", | ||
"contact": { | ||
|
@@ -22183,11 +22188,12 @@ | |
], | ||
"twitter": "contrib_roles" | ||
}, | ||
"homepage": "https://casrai.org/credit/", | ||
"homepage": "https://credit.niso.org/", | ||
"mappings": { | ||
"fairsharing": "FAIRsharing.fe4816" | ||
}, | ||
"name": "CASRAI Contributor Roles Taxonomy", | ||
"pattern": "^(conceptualization|data-curation|formal-analysis|funding-acquisition|investigation|methodology|project-administration|resources|software|supervision|validation|visualization|writing-original-draft|writing-review-editing)$", | ||
"publications": [ | ||
{ | ||
"doi": "10.1038/d41586-019-01715-4", | ||
|
@@ -22215,7 +22221,11 @@ | |
"title": "How can we ensure visibility and diversity in research contributions? How the Contributor Role Taxonomy (CRediT) is helping the shift from authorship to contributorship", | ||
"year": 2019 | ||
} | ||
] | ||
], | ||
"references": [ | ||
"https://casrai.org/credit/" | ||
], | ||
"uri_format": "https://credit.niso.org/contributor-roles/$1" | ||
}, | ||
"crisprdb": { | ||
"biocontext": { | ||
|
@@ -63630,6 +63640,30 @@ | |
"uri_format": "https://massive.ucsd.edu/ProteoSAFe/protein_explorer.jsp?libraries=2&protein_name=$1" | ||
} | ||
}, | ||
"mastodon": { | ||
"contributor": { | ||
"email": "[email protected]", | ||
"github": "cthoyt", | ||
"name": "Charles Tapley Hoyt", | ||
"orcid": "0000-0003-4423-4370" | ||
}, | ||
"homepage": "https://mastodon.social", | ||
"mappings": { | ||
"wikidata": "P4033" | ||
}, | ||
"name": "Mastodon", | ||
"wikidata": { | ||
"description": "address on the Mastodon decentralized social network (the form is '[email protected]' without a leading '@')", | ||
"example": [ | ||
"[email protected]", | ||
"[email protected]" | ||
], | ||
"name": "Mastodon address", | ||
"pattern": "^[A-Za-z0-9_]+([A-Za-z0-9_\\.]+[A-Za-z0-9_]+)?@[\\d\\w\\.\\-]+[0-9a-z]+$", | ||
"prefix": "P4033", | ||
"uri_format": "https://fedirect.toolforge.org/?id=$1" | ||
} | ||
}, | ||
"mat": { | ||
"aberowl": { | ||
"description": "Minimal set of terms for anatomy", | ||
|
@@ -94174,11 +94208,24 @@ | |
"example": "1981638", | ||
"homepage": "https://publons.com/researcher", | ||
"mappings": { | ||
"biolink": "ResearchID" | ||
"biolink": "ResearchID", | ||
"wikidata": "P3829" | ||
}, | ||
"name": "Publons Researcher", | ||
"pattern": "^\\d+$", | ||
"uri_format": "https://publons.com/researcher/$1" | ||
"uri_format": "https://publons.com/researcher/$1", | ||
"wikidata": { | ||
"description": "identifier of an author or reviewer, in Publons that redirects, along with P1053, to an ID in Clarivate's Web of Science", | ||
"example": [ | ||
"2388520", | ||
"2544783", | ||
"654601" | ||
], | ||
"name": "Publons author ID", | ||
"pattern": "^\\d+$", | ||
"prefix": "P3829", | ||
"uri_format": "https://publons.com/researcher/$1/" | ||
} | ||
}, | ||
"pubmed": { | ||
"biocontext": { | ||
|
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