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Issues: snakemake/snakemake
Announcement: Snakemake 8.0 released, including the removal o...
#2409
opened Aug 15, 2023 by
johanneskoester
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mamba 2.0.0 doesn't support the Something isn't working
--no-default-packages
option
bug
#3108
opened Sep 30, 2024 by
edbennett
Be able to depend on individual dataset(s) within an HDF5 file
enhancement
New feature or request
#3106
opened Sep 26, 2024 by
edbennett
snakemake dependency 'datrie' requires fragile C extention compiles on modern python
bug
Something isn't working
#3105
opened Sep 25, 2024 by
samimia-swks
Enhance Report Plugin Flexibility: Template Language Support, File Rendering Options, and Report Structure Customization
enhancement
New feature or request
#3102
opened Sep 25, 2024 by
MatthiasLienhard
Restoring cached folders results in a clock skew error
bug
Something isn't working
#3097
opened Sep 20, 2024 by
karl-az
Rerun triggers not causing dependent steps to be rerun
bug
Something isn't working
#3095
opened Sep 19, 2024 by
powelleric
snakemake slurm seem to limit number of threads
bug
Something isn't working
#3092
opened Sep 19, 2024 by
benjamin-lieser
Conda + container fails to forward apptainer-args
bug
Something isn't working
#3088
opened Sep 17, 2024 by
karl-az
Snakemake output prints sensitive information with storage plugin
bug
Something isn't working
#3087
opened Sep 14, 2024 by
MattMonk
Visually group modules into single rules via New feature or request
--modulegraph
enhancement
#3086
opened Sep 11, 2024 by
irm-codebase
Report rendering of rule fails if conda environment contains Something isn't working
pip
dependency
bug
#3084
opened Sep 11, 2024 by
votti
unintuitive behavior of Something isn't working
--delete-all-output
bug
#3079
opened Sep 8, 2024 by
ctb
Local input/output files with storage-fs and slurm plugin
bug
Something isn't working
#3071
opened Sep 5, 2024 by
raphaelbetschart
Print a "stack trace" after a MissingInputException
enhancement
New feature or request
#3063
opened Aug 31, 2024 by
thekswenson
Consider supporting docker engine along with appraiser as --sdm option
enhancement
New feature or request
#3061
opened Aug 30, 2024 by
jakevc
Why can't it recognize file names containing just numbers?
bug
Something isn't working
#3055
opened Aug 28, 2024 by
xiasijian
Verbose Warnings when building the docs
bug
Something isn't working
#3053
opened Aug 27, 2024 by
vandalt
$SLURM_JOB_ID
not set correctly in remote-job-local-storage-prefix
when running snakemake in a SLURM job context (which many cluster environments require)
bug
#3049
opened Aug 26, 2024 by
hermidalc
pdb
returns false 'NameError' exception for variables in list comprehension
bug
#3047
opened Aug 26, 2024 by
irm-codebase
snakemake >8.0.0 does not respect custom logging config
bug
Something isn't working
#3044
opened Aug 24, 2024 by
samimia-swks
groups
and group-components
are ignored on SLURM when defined in a profile YAML
bug
#3039
opened Aug 21, 2024 by
hermidalc
Dry-runs fail on initial runs of containerized workflows until container is pulled
bug
Something isn't working
#3038
opened Aug 21, 2024 by
zjnolen
Two checkpoint workflow fails to output all files in latest version 8.18.1
bug
Something isn't working
#3036
opened Aug 20, 2024 by
peterch405
Service rules do not work with consumers that have wildcards (many instances of the consumer rule)
bug
Something isn't working
#3035
opened Aug 20, 2024 by
hermidalc
Avoiding "haywire" CPU searches due to New feature or request
.snakemake/
conda environment explosion
enhancement
#3033
opened Aug 19, 2024 by
irm-codebase
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