Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: Split intersection with target region and normalize calls in separate rules. #90

Merged
merged 4 commits into from
Jun 28, 2024

Conversation

BiancaStoecker
Copy link
Collaborator

Separate the bedtools intersect command and bcftools norm in different rules. Previous solution did not work if there were no target regions.

@BiancaStoecker BiancaStoecker changed the title Fix: Fix normalize calls rule for callsets without target region fix: Fix normalize calls rule for callsets without target region Jun 27, 2024
@BiancaStoecker BiancaStoecker changed the title fix: Fix normalize calls rule for callsets without target region fix: Split intersection with target region and normalize calls in separate rules. Jun 27, 2024
workflow/rules/eval.smk Outdated Show resolved Hide resolved
workflow/rules/eval.smk Outdated Show resolved Hide resolved
@johanneskoester johanneskoester merged commit 795a82b into main Jun 28, 2024
5 checks passed
@johanneskoester johanneskoester deleted the fix/fix-normalize-calls branch June 28, 2024 09:46
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants