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Add rules to liftover callsets from hg19/GRCh37 to hg38/GRCh38 #69

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Add rules to liftover callsets from hg19/GRCh37 to hg38/GRCh38 #69

wants to merge 7 commits into from

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famosab
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@famosab famosab commented Apr 12, 2024

Still a WIP, just added some code I took from the bcftools liftover plugin. Open questions include

  • using docker since conda not available for plugin
  • how to download references, where to store
  • when to do the liftover (ideally as first rule?)

@famosab famosab closed this Apr 12, 2024
@famosab famosab deleted the feat/liftover branch April 12, 2024 14:15
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@famosab @johanneskoester