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Sync TEMPLATE made with nf-core tools 2.14.1 #40

Merged
merged 28 commits into from
May 29, 2024
Merged

Sync TEMPLATE made with nf-core tools 2.14.1 #40

merged 28 commits into from
May 29, 2024

Commits on May 29, 2024

  1. initial template build from nf-core/tools, version 2.14.1

    @maxulysse
    maxulysse committed May 29, 2024
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  2. Merge branch 'dev' into new_dev

    @maxulysse
    maxulysse committed May 29, 2024
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  3. fix name

    @maxulysse
    maxulysse committed May 29, 2024
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  4. fix name

    @maxulysse
    maxulysse committed May 29, 2024
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  5. fix name

    @maxulysse
    maxulysse committed May 29, 2024
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  6. more linting fix

    @maxulysse
    maxulysse committed May 29, 2024
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  7. update CHANGELOG

    @maxulysse
    maxulysse committed May 29, 2024
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  8. fix lint

    @maxulysse
    maxulysse committed May 29, 2024
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  9. Update README.md

    @maxulysse
    maxulysse authored May 29, 2024
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  10. remove files

    @maxulysse
    maxulysse committed May 29, 2024
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  11. Delete .github/.dockstore.yml

    @maxulysse
    maxulysse authored May 29, 2024
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  12. remove file

    @maxulysse
    maxulysse committed May 29, 2024
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  13. remove file

    @maxulysse
    maxulysse committed May 29, 2024
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  14. remove file

    @maxulysse
    maxulysse committed May 29, 2024
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  15. fix script

    @maxulysse
    maxulysse committed May 29, 2024
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  16. remove file

    @maxulysse
    maxulysse committed May 29, 2024
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  17. Delete subworkflows/local/utils_nfcore_aggregate_pipeline/main.nf

    @maxulysse
    maxulysse authored May 29, 2024
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  18. disable that

    @maxulysse
    maxulysse committed May 29, 2024
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  19. remove more files

    @maxulysse
    maxulysse committed May 29, 2024
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  20. disable that

    @maxulysse
    maxulysse committed May 29, 2024
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  21. add nf-core lint

    @maxulysse
    maxulysse committed May 29, 2024
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  22. wave profile should be there

    @maxulysse
    maxulysse committed May 29, 2024
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  23. Apply suggestions from code review

    @drpatelh
    drpatelh authored May 29, 2024
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  24. Delete modules/nf-core/multiqc/tests/main.nf.test.snap

    @maxulysse
    maxulysse authored May 29, 2024
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  25. include test modules data path

    @maxulysse
    maxulysse committed May 29, 2024
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  26. add nf-test files

    @maxulysse
    maxulysse committed May 29, 2024
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  27. restore snap file

    @maxulysse
    maxulysse committed May 29, 2024
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  28. Update CHANGELOG.md

    @maxulysse
    maxulysse authored May 29, 2024
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