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Add stub release notes for each product
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ewels committed Oct 4, 2024
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37 changes: 37 additions & 0 deletions changelog/multiqc_v1.25.1.mdx
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---
title: MultiQC v1.25.1
date: 2024-10-01
tags: [multiqc]
---

Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.

{/* truncate */}

### Updates

- Support Python 3.13 (officially to be released on Oct 7). Python 3.8 is supported for now, but might drop support in future releases, so make sure you update! ([#2871](https://github.com/MultiQC/MultiQC/pull/2862))
- Table sample groups UI: allow clicking the entire row to expand, add cursor pointer ([#2871](https://github.com/MultiQC/MultiQC/pull/2871))
- Disable plot export in incompatible architecture containers (when running through rosetta) ([#2888](https://github.com/MultiQC/MultiQC/pull/2888))

### Fixes

- Fix export general stats to `multiqc_data.json`: flatten row groups for back-compatibility ([#2879](https://github.com/MultiQC/MultiQC/pull/2879))
- Custom content:
- Fix the generalstats `headers` key name in documentation ([#2901](https://github.com/MultiQC/MultiQC/pull/2901))
- Validate table header config instead of failing ([#2875](https://github.com/MultiQC/MultiQC/pull/2875))

### Modules

- Kraken:
- Re-add the "Unclassified" tab to the "Top taxa" barplot ([#2881](https://github.com/MultiQC/MultiQC/pull/2881))
- Fix the minimizers heatmap ([#2895](https://github.com/MultiQC/MultiQC/pull/2895))
- Remove the separate Bracken module as it's just Kraken internally. Fixes the issues when Kraken reports without unclassified are misidentified for Bracken reports ([#2894](https://github.com/MultiQC/MultiQC/pull/2894))
- bbmap: support qhist outputs with only R1 and extra header ([#2882](https://github.com/MultiQC/MultiQC/pull/2882))
- Picard HsMetrics: fix collecting data sources ([#2880](https://github.com/MultiQC/MultiQC/pull/2880))

### Refactoring & infrastructure

- Test Docker image builds on every PR commit ([#2886](https://github.com/MultiQC/MultiQC/pull/2886))
- Suppress "SyntaxWarning: invalid escape sequence" warnings from `colormath` ([#2889](https://github.com/MultiQC/MultiQC/pull/2889))
- Check the `add_data_source` args (either `path` or `f` should be specified), use `strict_helpers.lint_error` ([#2865](https://github.com/MultiQC/MultiQC/pull/2865))
19 changes: 19 additions & 0 deletions changelog/nextflow_v24.04.4.mdx
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---
title: Nextflow 24.04.4
date: 2024-08-01
tags: [nextflow]
---

- Fix parsing of shm-size `containerOptions`
- Fix aws logs group name
- Update Azure batch deps
- Bump `[email protected]`
- Bump `[email protected]`
- Bump `[email protected]`
- Bump `[email protected]`
- Bump `wave-api` to `0.11.1`
- Bump `amazon sdk` to version `1.12.766`
- Bump `pf4j` to version `3.12.0`
- Bump `jgit` to version `6.10.0`

https://github.com/nextflow-io/nextflow/releases/tag/v24.04.4
29 changes: 29 additions & 0 deletions changelog/nextflow_v24.09.0-edge.mdx
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---
title: Nextflow 24.09.0-edge
date: 2024-10-02
tags: [nextflow]
---

- Add Fusion version pinning info to Fusion config scope
- Add container tip in the task error report
- Add support for Java 23
- Add Platform workflow prefix in AWS Batch job names
- Fix AWS spot attempts with zero value
- Fix Azure Fusion env misses credentials when no key or SAS provided
- Fix CI build taking only the commit msg header
- Fix Inconsistency with camelCase and kebab-case config param
- Fix XPath default de-serializer issue
- Fix failOnIgnore causes task monitor to stop submitting tasks
- Fix large mermaid diagrams
- Improve Wave build timeout handling
- Include additional fields to manifest
- Remove `mini` from Flux submit command
- Update container handling with charliecloud
- Update Documentation structure
- Update nextflow install docs
- Bump groovy 4.0.23
- Bump [email protected]
- Bump [email protected]
- Bump [email protected]

https://github.com/nextflow-io/nextflow/releases/tag/v24.09.0-edge
11 changes: 11 additions & 0 deletions changelog/wave_v1.12.4.mdx
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---
title: Wave v1.12.4
date: 2024-09-26
tags: [wave]
---

- Fix build succeded & status response [8a760b39](https://github.com/seqeralabs/wave/commit/8a760b39283800d3331ea7cfac2648a748c15571)

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**Full Changelog**: https://github.com/seqeralabs/wave/compare/v1.12.3...v1.12.4

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