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--- | ||
title: MultiQC v1.25.1 | ||
date: 2024-10-01 | ||
tags: [multiqc] | ||
--- | ||
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Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures. | ||
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{/* truncate */} | ||
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### Updates | ||
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- Support Python 3.13 (officially to be released on Oct 7). Python 3.8 is supported for now, but might drop support in future releases, so make sure you update! ([#2871](https://github.com/MultiQC/MultiQC/pull/2862)) | ||
- Table sample groups UI: allow clicking the entire row to expand, add cursor pointer ([#2871](https://github.com/MultiQC/MultiQC/pull/2871)) | ||
- Disable plot export in incompatible architecture containers (when running through rosetta) ([#2888](https://github.com/MultiQC/MultiQC/pull/2888)) | ||
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### Fixes | ||
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- Fix export general stats to `multiqc_data.json`: flatten row groups for back-compatibility ([#2879](https://github.com/MultiQC/MultiQC/pull/2879)) | ||
- Custom content: | ||
- Fix the generalstats `headers` key name in documentation ([#2901](https://github.com/MultiQC/MultiQC/pull/2901)) | ||
- Validate table header config instead of failing ([#2875](https://github.com/MultiQC/MultiQC/pull/2875)) | ||
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### Modules | ||
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- Kraken: | ||
- Re-add the "Unclassified" tab to the "Top taxa" barplot ([#2881](https://github.com/MultiQC/MultiQC/pull/2881)) | ||
- Fix the minimizers heatmap ([#2895](https://github.com/MultiQC/MultiQC/pull/2895)) | ||
- Remove the separate Bracken module as it's just Kraken internally. Fixes the issues when Kraken reports without unclassified are misidentified for Bracken reports ([#2894](https://github.com/MultiQC/MultiQC/pull/2894)) | ||
- bbmap: support qhist outputs with only R1 and extra header ([#2882](https://github.com/MultiQC/MultiQC/pull/2882)) | ||
- Picard HsMetrics: fix collecting data sources ([#2880](https://github.com/MultiQC/MultiQC/pull/2880)) | ||
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### Refactoring & infrastructure | ||
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- Test Docker image builds on every PR commit ([#2886](https://github.com/MultiQC/MultiQC/pull/2886)) | ||
- Suppress "SyntaxWarning: invalid escape sequence" warnings from `colormath` ([#2889](https://github.com/MultiQC/MultiQC/pull/2889)) | ||
- Check the `add_data_source` args (either `path` or `f` should be specified), use `strict_helpers.lint_error` ([#2865](https://github.com/MultiQC/MultiQC/pull/2865)) |
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--- | ||
title: Nextflow 24.04.4 | ||
date: 2024-08-01 | ||
tags: [nextflow] | ||
--- | ||
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- Fix parsing of shm-size `containerOptions` | ||
- Fix aws logs group name | ||
- Update Azure batch deps | ||
- Bump `[email protected]` | ||
- Bump `[email protected]` | ||
- Bump `[email protected]` | ||
- Bump `[email protected]` | ||
- Bump `wave-api` to `0.11.1` | ||
- Bump `amazon sdk` to version `1.12.766` | ||
- Bump `pf4j` to version `3.12.0` | ||
- Bump `jgit` to version `6.10.0` | ||
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https://github.com/nextflow-io/nextflow/releases/tag/v24.04.4 |
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--- | ||
title: Nextflow 24.09.0-edge | ||
date: 2024-10-02 | ||
tags: [nextflow] | ||
--- | ||
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- Add Fusion version pinning info to Fusion config scope | ||
- Add container tip in the task error report | ||
- Add support for Java 23 | ||
- Add Platform workflow prefix in AWS Batch job names | ||
- Fix AWS spot attempts with zero value | ||
- Fix Azure Fusion env misses credentials when no key or SAS provided | ||
- Fix CI build taking only the commit msg header | ||
- Fix Inconsistency with camelCase and kebab-case config param | ||
- Fix XPath default de-serializer issue | ||
- Fix failOnIgnore causes task monitor to stop submitting tasks | ||
- Fix large mermaid diagrams | ||
- Improve Wave build timeout handling | ||
- Include additional fields to manifest | ||
- Remove `mini` from Flux submit command | ||
- Update container handling with charliecloud | ||
- Update Documentation structure | ||
- Update nextflow install docs | ||
- Bump groovy 4.0.23 | ||
- Bump [email protected] | ||
- Bump [email protected] | ||
- Bump [email protected] | ||
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https://github.com/nextflow-io/nextflow/releases/tag/v24.09.0-edge |
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--- | ||
title: Wave v1.12.4 | ||
date: 2024-09-26 | ||
tags: [wave] | ||
--- | ||
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- Fix build succeded & status response [8a760b39](https://github.com/seqeralabs/wave/commit/8a760b39283800d3331ea7cfac2648a748c15571) | ||
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{/* truncate */} | ||
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**Full Changelog**: https://github.com/seqeralabs/wave/compare/v1.12.3...v1.12.4 |