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Patch matchin sam #9

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Patch matchin sam #9

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Commits on Nov 18, 2023

  1. add sorting generator

    @h-mayorquin
    h-mayorquin committed Nov 18, 2023
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  2. add more tests

    @h-mayorquin
    h-mayorquin committed Nov 18, 2023
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Commits on May 10, 2024

  1. Merge branch 'main' into add_sorting_generator

    @h-mayorquin
    h-mayorquin committed May 10, 2024
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  2. added docstring

    @h-mayorquin
    h-mayorquin committed May 10, 2024
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Commits on Jun 24, 2024

  1. Merge branch 'main' into add_sorting_generator

    @h-mayorquin
    h-mayorquin authored Jun 24, 2024
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Commits on Sep 9, 2024

  1. Merge branch 'main' into add_sorting_generator

    @h-mayorquin
    h-mayorquin authored Sep 9, 2024
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Commits on Sep 12, 2024

  1. add channel recording to the base recording api

    @h-mayorquin
    h-mayorquin committed Sep 12, 2024
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  2. Update src/spikeinterface/core/baserecording.py 

    Co-authored-by: Zach McKenzie <[email protected]>
    @h-mayorquin @zm711
    h-mayorquin and zm711 authored Sep 12, 2024
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  3. Update src/spikeinterface/core/baserecording.py 

    Co-authored-by: Zach McKenzie <[email protected]>
    @h-mayorquin @zm711
    h-mayorquin and zm711 authored Sep 12, 2024
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Commits on Sep 16, 2024

  1. Add kachery_zone secret

    @alejoe91
    alejoe91 committed Sep 16, 2024
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  2. Trigger widgets tests

    @alejoe91
    alejoe91 committed Sep 16, 2024
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  3. Merge branch 'prepare_release' of github.com:SpikeInterface/spikeinte… 

    …rface into test-tmp-kachery-cloud
    @alejoe91
    alejoe91 committed Sep 16, 2024
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  4. generate_unit_locations

    @h-mayorquin
    h-mayorquin committed Sep 16, 2024
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  5. Apply suggestions from code review 

    Thanks a bunch Zach

Co-authored-by: Zach McKenzie <[email protected]>
    @h-mayorquin @zm711
    h-mayorquin and zm711 authored Sep 16, 2024
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Commits on Sep 17, 2024

  1. Merge branch 'main' into add_docstirng_for_generate_unit_locations

    @h-mayorquin
    h-mayorquin authored Sep 17, 2024
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Commits on Sep 18, 2024

  1. add macos latest to test

    @h-mayorquin
    h-mayorquin committed Sep 18, 2024
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  2. add condition to run everything if workflow files are changed

    @h-mayorquin
    h-mayorquin committed Sep 18, 2024
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  3. add checks

    @h-mayorquin
    h-mayorquin committed Sep 18, 2024
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  4. add sampling frequency to blackrock to avoid warning

    @h-mayorquin
    h-mayorquin committed Sep 18, 2024
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  5. Update job_tools.py

    @jiumao2
    jiumao2 committed Sep 18, 2024
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  6. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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  7. Update job_tools.py

    @jiumao2
    jiumao2 committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. Merge branch 'main' of github.com:SpikeInterface/spikeinterface into … 

    …test-tmp-kachery-cloud
    @alejoe91
    alejoe91 committed Sep 19, 2024
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  2. Update src/spikeinterface/widgets/tests/test_widgets.py

    @alejoe91
    alejoe91 authored Sep 19, 2024
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  3. Merge pull request SpikeInterface#3416 from SpikeInterface/test-tmp-k… 

    …achery-cloud

Add kachery_zone secret
    @alejoe91
    alejoe91 authored Sep 19, 2024
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Commits on Sep 20, 2024

  1. Set run_info to None for load_waveforms

    @alejoe91
    alejoe91 committed Sep 20, 2024
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Commits on Sep 23, 2024

  1. Fix compute analyzer pipeline with tmp recording

    @alejoe91
    alejoe91 committed Sep 23, 2024
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  2. Fix bug in saving zarr recordings

    @alejoe91
    alejoe91 committed Sep 23, 2024
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  3. Merge pull request SpikeInterface#3432 from alejoe91/save-non-array-t… 

    …imes

Fix bug in saving zarr recordings
    @alejoe91
    alejoe91 authored Sep 23, 2024
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  4. Add max_threads_per_process to pca fit_by_channel

    @alejoe91
    alejoe91 committed Sep 23, 2024
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  5. Merge pull request SpikeInterface#3430 from alejoe91/fix-get-data-com… 

    …patibility

Set `run_info` to `None` for `load_waveforms`
    @samuelgarcia
    samuelgarcia authored Sep 23, 2024
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  6. Add mp_context check

    @alejoe91
    alejoe91 committed Sep 23, 2024
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  7. Add mp_context and max_threads_per_process to pca metrics

    @alejoe91
    alejoe91 committed Sep 23, 2024
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  8. Merge branch 'main' of github.com:SpikeInterface/spikeinterface into … 

    …fix-pca-multiprocessing
    @alejoe91
    alejoe91 committed Sep 23, 2024
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  9. Merge branch 'main' of github.com:SpikeInterface/spikeinterface into … 

    …postprocessing-tmp-recording
    @alejoe91
    alejoe91 committed Sep 23, 2024
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  10. Zach's suggestion and more docstring fixes

    @alejoe91
    alejoe91 committed Sep 23, 2024
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  11. Merge pull request SpikeInterface#3433 from alejoe91/postprocessing-t… 

    …mp-recording

Fix compute analyzer pipeline with tmp recording
    @alejoe91
    alejoe91 authored Sep 23, 2024
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  12. Merge branch 'main' of github.com:SpikeInterface/spikeinterface into … 

    …fix-pca-multiprocessing
    @alejoe91
    alejoe91 committed Sep 23, 2024
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  13. Merge pull request SpikeInterface#3426 from jiumao2/main 

    Fix integer overflow in parallel computing
    @alejoe91
    alejoe91 authored Sep 23, 2024
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  14. Merge pull request SpikeInterface#3422 from h-mayorquin/add_macos_latest 

    Enable testing arm64 Mac architecture in the CI.
    @alejoe91
    alejoe91 authored Sep 23, 2024
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  15. Merge pull request SpikeInterface#3403 from h-mayorquin/add_get_chann… 

    …el_locations_to_the_api

Add `get_channel_locations` to the base recording api
    @alejoe91
    alejoe91 authored Sep 23, 2024
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  16. Merge branch 'main' into add_docstirng_for_generate_unit_locations

    @h-mayorquin
    h-mayorquin authored Sep 23, 2024
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Commits on Sep 24, 2024

  1. Merge branch 'main' into fix-pca-multiprocessing

    @alejoe91
    alejoe91 authored Sep 24, 2024
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Commits on Sep 25, 2024

  1. Update src/spikeinterface/core/generate.py 

    Co-authored-by: Garcia Samuel <[email protected]>
    @alejoe91 @samuelgarcia
    alejoe91 and samuelgarcia authored Sep 25, 2024
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  2. Merge pull request SpikeInterface#3418 from h-mayorquin/add_docstirng… 

    …_for_generate_unit_locations

Add docstring for `generate_unit_locations`
    @samuelgarcia
    samuelgarcia authored Sep 25, 2024
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  3. Merge pull request SpikeInterface#2227 from h-mayorquin/add_sorting_g… 

    …enerator

Add spike-train based lazy SortingGenerator
    @alejoe91
    alejoe91 authored Sep 25, 2024
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  4. Get default encoding for Popen

    @alejoe91
    alejoe91 committed Sep 25, 2024
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  5. back to dev mode

    @zm711
    zm711 committed Sep 25, 2024
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  6. bump version number

    @zm711
    zm711 committed Sep 25, 2024
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  7. Merge pull request SpikeInterface#3440 from zm711/after-release 

    After release 0.101.1
    @alejoe91
    alejoe91 authored Sep 25, 2024
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  8. Allow to save recordingless analyzer as

    @alejoe91
    alejoe91 committed Sep 25, 2024
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  9. Fix missing run_info

    @alejoe91
    alejoe91 committed Sep 25, 2024
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  10. Fix missing run_info 2

    @alejoe91
    alejoe91 committed Sep 25, 2024
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  11. Fix missing run_info 3

    @alejoe91
    alejoe91 committed Sep 25, 2024
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Commits on Sep 26, 2024

  1. Relax causal filter tests

    @alejoe91
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  2. Merge pull request SpikeInterface#3445 from alejoe91/relax-causal-fil… 

    …ter-tests

Relax causal filter tests
    @alejoe91
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  3. Merge branch 'main' into fix-save-as-recordingless

    @alejoe91
    alejoe91 authored Sep 26, 2024
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  4. relax test causal to fix failure

    @alejoe91
    alejoe91 committed Sep 26, 2024
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  5. Chris' suggestion

    @alejoe91
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Commits on Sep 27, 2024

  1. Expose zarr_kwargs at the analyzer level to zarr dataset options

    @alejoe91
    alejoe91 committed Sep 27, 2024
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  2. Update src/spikeinterface/core/sortinganalyzer.py

    @alejoe91
    alejoe91 authored Sep 27, 2024
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  3. Fix tests

    @alejoe91
    alejoe91 committed Sep 27, 2024
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  4. Merge pull request SpikeInterface#3434 from alejoe91/fix-pca-multipro… 

    …cessing

Add `max_threads_per_process` and `mp_context` to pca by channel computation and PCA metrics
    @alejoe91
    alejoe91 authored Sep 27, 2024
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Commits on Sep 28, 2024

  1. Improve IBL recording extractor with PID

    @alejoe91
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  2. Improve IBL recording extractors by PID

    @alejoe91
    alejoe91 committed Sep 28, 2024
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Commits on Sep 30, 2024

  1. Merge branch 'main' of github.com:SpikeInterface/spikeinterface into … 

    …expose-zarr-compression
    @alejoe91
    alejoe91 committed Sep 30, 2024
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  2. Fix reset_global_job_kwargs

    @alejoe91
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  3. Skip saving empty recording files/fields and improve warnings and ass… 

    …ertions
    @alejoe91
    alejoe91 committed Sep 30, 2024
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  4. Remove redundant assertions

    @alejoe91
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  5. Use more general backend_kwargs

    @alejoe91
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  6. Merge branch 'main' into ibl-extractor-pid

    @alejoe91
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  7. further relaxation of causal_filter equality tests....

    @alejoe91
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Commits on Oct 1, 2024

  1. Add _default_job_kwargs

    @alejoe91
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  2. Use backend_options for storage/saving_options

    @alejoe91
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  3. Merge pull request SpikeInterface#3452 from alejoe91/fix-reset-job-kw… 

    …args

Fix `reset_global_job_kwargs`
    @samuelgarcia
    samuelgarcia authored Oct 1, 2024
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  4. Merge pull request SpikeInterface#3443 from alejoe91/fix-save-as-reco… 

    …rdingless

Allow to save recordingless analyzer as
    @samuelgarcia
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  5. Merge pull request SpikeInterface#3449 from alejoe91/ibl-extractor-pid 

    Improve IBL recording extractors by PID
    @alejoe91
    alejoe91 authored Oct 1, 2024
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  6. Fix conflicts

    @alejoe91
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  7. Fix saving analyzer directly to remote storage

    @alejoe91
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  8. Only reset extension when save is False

    @alejoe91
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  9. Avoid warnings in sortin analyzer

    @samuelgarcia
    samuelgarcia committed Oct 1, 2024
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  10. fix random_spikes_selection()

    @samuelgarcia
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  11. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  12. Merge pull request SpikeInterface#3455 from samuelgarcia/fix_warning_qm 

    Avoid warnings in sorting analyzer
    @alejoe91
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Commits on Oct 2, 2024

  1. Merge pull request SpikeInterface#3439 from alejoe91/fix-encoding 

    Get default encoding for Popen
    @alejoe91
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  2. Merge pull request SpikeInterface#3456 from samuelgarcia/fix_select_s… 

    …pikes

fix random_spikes_selection()
    @alejoe91
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  3. Merge branch 'main' of github.com:SpikeInterface/spikeinterface into … 

    …expose-zarr-compression
    @alejoe91
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  4. Fall back to anon=True for zarr extractors and analyzers in case back… 

    …end/storage options is not provided
    @alejoe91
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  5. Protect against uninitialized chunks and add anonymous zarr open

    @alejoe91
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  6. Merge pull request SpikeInterface#3446 from alejoe91/expose-zarr-comp… 

    …ression

Expose `backend_options` at the analyzer level to set `storage_options` and `saving_options`
    @alejoe91
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Commits on Oct 3, 2024

  1. Merge branch 'refactor_matching' of github.com:samuelgarcia/spikeinte… 

    …rface into patch_matchin_sam
    @yger
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  2. WIP

    @yger
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