Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Document the ambiguity of 1-base long seq with QUAL * #724

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

jkbonfield
Copy link
Contributor

This is an extreme edge case likely to never occur, but nevertheless tool implementors still need to know how to handle it. Given it may be QUAL 9 or it may be QUAL "unknown", we treat it as always unknown.

Fixes #715

This is an extreme edge case likely to never occur, but nevertheless
tool implementors still need to know how to handle it.  Given it *may*
be QUAL 9 or it *may* be QUAL "unknown", we treat it as always unknown.

Fixes samtools#715
@jkbonfield jkbonfield added the sam label May 2, 2023
@github-actions
Copy link

github-actions bot commented May 2, 2023

Changed PDFs as of cca15e8: SAMv1 (diff).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
Status: Needs review
Development

Successfully merging this pull request may close these issues.

sam: Quality score ambiguity when sequence is a single base
2 participants