rgbif 3.8.1 (#754)

ropensci · Sep 26, 2024 · f08491b · f08491b
1 parent 495a552
commit f08491b
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Showing 6 changed files with 26 additions and 8 deletions.
diff --git a/.github/workflows/revdep-check.yaml b/.github/workflows/revdep-check.yaml
@@ -39,7 +39,7 @@ jobs:
         run: Rscript -e "revdepcheck::revdep_reset()" -e "revdepcheck::revdep_check(num_workers=4)"
 
       - name: Upload revdepcheck results
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         with:
           name: ${{ runner.os }}-r${{ matrix.config.r }}-results
           path: revdep/*.md
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -8,7 +8,7 @@ Description: A programmatic interface to the Web Service methods
     retrieving information on data providers, getting species occurrence
     records, getting counts of occurrence records, and using the GBIF
     tile map service to make rasters summarizing huge amounts of data.
-Version: 3.8.0.2
+Version: 3.8.1
 License: MIT + file LICENSE
 Authors@R: c(
     person("Scott", "Chamberlain", role = "aut", comment = c(ORCID="0000-0003-1444-9135")),

diff --git a/NAMESPACE b/NAMESPACE
@@ -18,6 +18,8 @@ S3method(print,occ_download_describe)
 S3method(print,occ_download_get)
 S3method(print,occ_download_meta)
 S3method(print,occ_download_prep)
+S3method(print,occ_download_sql)
+S3method(print,occ_download_sql_prep)
 S3method(print,occ_predicate)
 S3method(print,occ_predicate_list)
 export("%>%")

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,18 @@
+rgbif 3.8.1
+===========
+
+### NEW FEATURES
+
+* New function `occ_download_sql()` for downloading occurrence data using SQL queries. (#752)
+
+## BUG FIXES
+
+* `occ_download_cached()` bug fixed. (#748)
+
+### DOCUMENTATION
+
+* New article [GBIF SQL Downloads](https://docs.ropensci.org/rgbif/articles/gbif_sql_downloads.html)
+
 rgbif 3.8.0
 ===========
 

diff --git a/R/occ_download_sql.R b/R/occ_download_sql.R
@@ -118,7 +118,8 @@ occ_download_sql_prep <- function(q=NULL,
 
 }
 
-print.occ_download_sql <- function(x) {
+#' @export
+print.occ_download_sql <- function(x, ...) {
   stopifnot(inherits(x, 'occ_download_sql'))
   cat_n("<<gbif download sql>>")
   cat_n("  Your download is being processed by GBIF:")
@@ -143,8 +144,8 @@ print.occ_download_sql <- function(x) {
   cat_n("  ", attr(x,"citation"))
 }
 
-
-print.occ_download_sql_prep <- function(x) {
+#' @export
+print.occ_download_sql_prep <- function(x, ...) {
   stopifnot(inherits(x, 'occ_download_sql_prep'))
   cat_n("<<Occurrence Download SQL Prep>>")
   cat_n("Format: ", x$format)

diff --git a/codemeta.json b/codemeta.json
@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/ropensci/rgbif",
   "issueTracker": "https://github.com/ropensci/rgbif/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "3.8.0",
+  "version": "3.8.1",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -358,7 +358,7 @@
   "applicationCategory": "Biodiversity",
   "isPartOf": "https://ropensci.org",
   "keywords": ["GBIF", "specimens", "API", "web-services", "occurrences", "species", "taxonomy", "gbif", "api", "data", "biodiversity", "rstats", "r", "spocc", "r-package", "lifewatch", "oscibio"],
-  "fileSize": "6425.728KB",
+  "fileSize": "11403.838KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -402,7 +402,7 @@
       ],
       "name": "rgbif: Interface to the Global Biodiversity Information Facility API",
       "url": "https://CRAN.R-project.org/package=rgbif",
-      "description": "R package version 3.8.0"
+      "description": "R package version 3.8.1"
     },
     {
       "@type": "ScholarlyArticle",