Repositories list

• bsmn-pipeline

  Public
  BSMN common data processing pipeline

  Shell

  •10•12•7•2•Updated Mar 21, 2022Mar 21, 2022

• fastq-split-readgroup-tool

  Public
  Split a fastq file into separate files based on read header information.

  Shell

  •

  Apache License 2.0

  •1•0•0•1•Updated Jun 2, 2020Jun 2, 2020

• grantdatavalidator

  Public
  Validate BSMN Grant Data

  R

  •

  Apache License 2.0

  •1•0•0•0•Updated May 27, 2020May 27, 2020

• ndasynapse-manifests

  Public
  Get BSMN submission manifests from NDA and push to Synapse.

  Shell

  •

  Apache License 2.0

  •1•0•0•0•Updated Apr 20, 2020Apr 20, 2020

• ndasynapse

  Public
  Code for synchronizing NDAR data with Synapse

  Python

  •2•1•5•0•Updated Apr 20, 2020Apr 20, 2020

• bsmn-common-workflow

  Public archive
  The BSMN common workflow.

  Common Workflow Language

  •

  Apache License 2.0

  •0•1•2•0•Updated Jun 4, 2019Jun 4, 2019

• gdc-fastq-splitter

  Public
  CLI for splitting a fastq that has multiple readgroups

  Python

  •

  Apache License 2.0

  •3•0•0•0•Updated Mar 27, 2018Mar 27, 2018

• Data_Processing

  Public
  Repository of computational pipelines for the processing of BSMN data

  1•0•0•0•Updated Feb 22, 2016Feb 22, 2016