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    13 repositories

    • mysql-operator

      Public
      Manage MySQL users, databases, schemas, etc.
      Go
      •5•0•0•1•Updated Sep 24, 2024Sep 24, 2024

    • SHEPHERD

      Public
      SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
      HTML
      •
      MIT License
      •16•0•0•2•Updated Aug 26, 2024Aug 26, 2024

    • pgr-tk

      Public
      PGR-TK: Pangenome Research Tool Kit
      Rust
      •
      MIT License
      •13•96•5•1•Updated Apr 22, 2024Apr 22, 2024

    • txt2hpo

      Public
      Python library for extracting HPO encoded phenotypes from text
      information-retrievalparsingphenotypemedical-recordsphenotype-ontologiespythonphenotypeshpo
      Python
      •
      Other
      •4•27•6•2•Updated Apr 22, 2024Apr 22, 2024

    • phenopy

      Public
      Phenotype comparison tools using semantic similarity.
      semantic-similarityphenotypeshpophenomics
      Python
      •
      Other
      •10•61•3•4•Updated Apr 22, 2024Apr 22, 2024

    • scramble

      Public
      R
      •
      Other
      •12•37•12•2•Updated Apr 22, 2024Apr 22, 2024

    • temporalio-helm-charts

      Public
      GitHub Action workflow to release the Temporal.io helm charts
      0•0•0•1•Updated Apr 22, 2024Apr 22, 2024

    • pangolin

      Public
      refactoring pangolin to run splicing prediction on gnomAD v3 & v4 variants
      Python
      •
      GNU General Public License v3.0
      •33•1•0•0•Updated Oct 5, 2023Oct 5, 2023

    • pgr-tk-notebooks

      Public
      Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks
      Jupyter Notebook
      •
      Other
      •4•13•0•0•Updated Mar 17, 2023Mar 17, 2023

    • SpliceAI

      Public
      A deep learning-based tool to identify splice variants
      Python
      •
      Other
      •161•1•0•0•Updated Dec 9, 2020Dec 9, 2020

    • sema4-archive-terraform-aws-vpc

      Public archive
      Terraform module which creates VPC resources on AWS
      HCL
      •
      Other
      •4.5k•1•0•0•Updated May 28, 2019May 28, 2019

    • PyCap

      Public
      REDCap in Python
      Python
      •
      MIT License
      •80•1•0•0•Updated Oct 18, 2018Oct 18, 2018

    • sema4-archive-calculate_multipart_etag

      Public archive
      Given a file and a chunk size in megabytes, calculates what the Amazon S3 etag will be.
      Python
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Dec 11, 2017Dec 11, 2017