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    209 repositories

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•9•0•0•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •41•11•0•6•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-test

      Public
      Test libraries and harnesses used for running the Ensembl test suite
      Perl
      •
      Apache License 2.0
      •7•6•0•0•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •1•3•0•0•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-metadata

      Public
      API for storing and querying metadata from Ensembl and EnsemblGenomes
      Perl
      •
      Apache License 2.0
      •5•5•0•1•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•0•0•1•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-web-tools-api

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •3•13•0•3•Updated Oct 7, 2024Oct 7, 2024

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•51•0•5•Updated Oct 7, 2024Oct 7, 2024

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •8•36•1•0•Updated Oct 7, 2024Oct 7, 2024

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •46•9•0•1•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-genes-metadata

      Public
      Perl
      •
      Apache License 2.0
      •0•0•2•1•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•16•0•1•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •2•1•0•1•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •3•4•0•0•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•2•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •54•27•0•8•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •151•449•69•8•Updated Oct 4, 2024Oct 4, 2024

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •115•138•11•1•Updated Oct 4, 2024Oct 4, 2024

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Oct 3, 2024Oct 3, 2024

    • ensembl-otter

      Public
      annosoft
      Perl
      •3•3•0•1•Updated Oct 3, 2024Oct 3, 2024

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •48•22•0•2•Updated Oct 3, 2024Oct 3, 2024

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      mysqlpythonjavadockerpipelinesqliteperldocker-swarmpostgresqlslurm
      Perl
      •
      Apache License 2.0
      •28•52•0•2•Updated Oct 2, 2024Oct 2, 2024

    • ensembl-py

      Public
      Python Ensembl code source repository
      Python
      •
      Apache License 2.0
      •10•5•0•0•Updated Oct 1, 2024Oct 1, 2024

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • ensembl-prodinf-masterdb

      Public
      Ensembl Browser Reference Database Administration Backend
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • ensembl-production-services

      Public
      Ensembl production service portal
      djangodjango-rest-frameworkpython3
      Python
      •
      Apache License 2.0
      •1•2•0•2•Updated Sep 29, 2024Sep 29, 2024

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•2•0•8•Updated Sep 26, 2024Sep 26, 2024