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@BICCN BRAIN Initiative Cell Census Network (BICCN)

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    20 repositories

    • BCDC-Metadata

      Public
      Interim repository for BCDC metadata per quarter.
      6•4•4•1•Updated Sep 17, 2024Sep 17, 2024

    • Quarterly_Submission_Receipts

      Public
      Repository for Quarterly Submission Receipts.
      HTML
      •1•2•0•0•Updated Oct 19, 2023Oct 19, 2023

    • cell-locator

      Public
      manually align specimens to annotated 3D spaces
      vtkitkallen-brain-atlas3d-slicer-custom-applicationbiccnmni-atlas
      Python
      •
      Other
      •7•19•34•1•Updated May 10, 2023May 10, 2023

    • TMN

      Public
      Repository for work on neuroscience techniques ontology development.
      Makefile
      •1•1•3•0•Updated Dec 7, 2022Dec 7, 2022

    • BICCN-Infrastructure

      Public
      Documentation about BICCN Infrastructure and Data Policies
      10•2•7•6•Updated Jul 20, 2022Jul 20, 2022

    • controlled-vocabularies.github.io

      Public
      2•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • morphology-inventory-prototype

      Public
      Repository to share document, example code and data towards creating a standardized whole brain morphology inventory
      HTML
      •0•0•0•0•Updated May 12, 2022May 12, 2022

    • swc_specification

      Public archive
      Information about the SWC file specification
      0•0•0•0•Updated Mar 21, 2022Mar 21, 2022

    • BCDC-documentation

      Public
      Documentation for BCDC
      0•0•0•0•Updated Mar 1, 2022Mar 1, 2022

    • BICCN.github.io

      Public
      HTML
      •0•0•0•0•Updated Feb 23, 2022Feb 23, 2022

    • AnatomyCompanion

      Public
      1•3•0•0•Updated Jul 29, 2021Jul 29, 2021

    • CellCensusMotorCortex

      Public
      Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"
      3•21•9•0•Updated Jul 16, 2021Jul 16, 2021

    • terra-import-builder

      Public
      Cloud Function for staging JSON payloads in GCS for use by Terra's pull-based import API.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•0•1•Updated Feb 18, 2021Feb 18, 2021

    • NeMO-Broad-Demo-2018

      Public
      This demo describes data flow between NeMO and the Broad
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Nov 10, 2020Nov 10, 2020

    • 2020-BICCN-Portals-Workshop

      Public
      This site contains the material and documentation supporting the BICCN portals workshop held on 2020.
      1•1•0•0•Updated Oct 22, 2020Oct 22, 2020

    • nemo-terra-cloud-computing

      Public
      The wiki to this repo describes the joint NeMO (Univ Maryland) and Terra (Broad) Cloud Computing Environment for the BCDC.
      0•0•0•0•Updated Jul 8, 2020Jul 8, 2020

    • ccf_registration_2020

      Public archive
      CCF Registration Competition 2020
      BSD 3-Clause "New" or "Revised" License
      •2•0•7•2•Updated Jun 8, 2020Jun 8, 2020

    • Anatomy-Transcriptomics-Portal-Wiki

      Public
      This repo describes the Anatomy and Transcriptomics joint portal comprised of the Cold Spring Harbor Laboratory Brain Architecture portal and the Broad Institute's Single Cell Portal.
      MIT License
      •0•0•0•0•Updated Jan 3, 2020Jan 3, 2020

    • OSDF

      Public
      Open Science Data Framework (OSDF)
      JavaScript
      •
      MIT License
      •3•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • probe_selection

      Public
      Tools for for selecting probes for in situ transcriptomics using scRNA-Seq data
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 18, 2018Oct 18, 2018