Goal: To create a community resource as an integral part of the BICCN Morphology Working group joint analysis effort containing CCF-mapped morphologies with annotation of cell body locations and projection targets. The inventory integrates imaging, reconstruction and registration data from multiple teams in a standardized format and organization along with essential metadata and provenance.
The inventory will include
- Organism/brain essential metadata
- Link to primary image data
- Downsampled version of primary image data in a standardized 3D image data format
- Link to imaging protocol and methods
- Cell reconstruction in primary data coordinates in a standardized SWC format
- Link to reconstruction protocol and methods
- Resampled primary image data mapped to the CCF at 10 micron resolution in a standardized 3D image data format
- Link to CCF registration protocol and methods
- Resampled cell reconstruction in CCF coordinates in a standardized SWC format
- CCF based computed and visualization
- Computed after submission and based on specific version of CCF atlas annotation
- See prototype thumbnails for the U19Zeng project
- See prototype thumbnails for MouseLight neurons
- BICCN data standards - Morphology data presentation (8/4/2021, Lydia Ng)