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PDBFixer - in some cases added residues have amides with non-trans OCNH stereochemistry
bug
#307
opened Sep 30, 2024 by
ivanicj
fixer.findMissingResidues() could not find the missing residues !
#305
opened Aug 23, 2024 by
Jalil-Mahdizadeh
Weird coordinates and unable to add Hydrogens upon adding tyrosines
#304
opened Aug 20, 2024 by
sukritsingh
Should PDBFixer write out SEQRES entries if provided in the input?
#293
opened Jun 6, 2024 by
sukritsingh
Mutating to non-standard amino acids not present in available force field libraries
#286
opened Feb 29, 2024 by
amin-sagar
The repair of two ends of peptide didn't return the desired result
#283
opened Dec 6, 2023 by
bdx114514
Do we have method to mutate the iCode-containing residue?
enhancement
#280
opened Oct 11, 2023 by
locitran
findMissingAtoms raises AttributeError if findMissingResidues has not been called first
#279
opened Oct 4, 2023 by
nielskm
Invalide chirality when fixing neural network generated structure
#274
opened Jun 6, 2023 by
ryankzhu
Is there any molecular dynamics or docking research published using pdbfixer?
#270
opened Apr 25, 2023 by
RuikangSun
[Unexpected behaviour] Unexpected behavoiur when parsing mmCIF files
#269
opened Feb 16, 2023 by
Croydon-Brixton
Adding phosphorylated residues to PDBFixer templates
enhancement
#259
opened Nov 22, 2022 by
sukritsingh
PDB file lines read in as Models, throws "AttributeError: 'Model' object has no attribute 'decode'"
#237
opened Nov 25, 2021 by
ddcas9
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