debug: Slurm Github Action workflow

.github/workflows/compliance.yaml

@@ -25,7 +25,9 @@ name: Compliance Test
 
 on:
   push:
-  pull_request:
+    branches:
+      - main
+  # pull_request:
 
 jobs:
   build:

.github/workflows/hugo.yml

@@ -4,7 +4,8 @@ name: Deploy Hugo site to Pages
 on:
   # Runs on pushes targeting the default branch
   push:
-    branches: ["master"]
+    branches:
+      - main
 
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:

.github/workflows/tests.yaml

@@ -2,101 +2,103 @@ name: Go Tests
 
 on:
   push:
-  pull_request:
+    branches:
+      - main
+  # pull_request:
 
 jobs:
-  lint:
-    name: lint
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/setup-go@v3
-        with:
-          go-version: 1.21
-
-      - uses: actions/checkout@v3
+  # lint:
+  #   name: lint
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #     - uses: actions/setup-go@v3
+  #       with:
+  #         go-version: 1.21
+
+  #     - uses: actions/checkout@v3
 
-      - name: golangci-lint
-        uses: golangci/golangci-lint-action@v3
-        with:
-          version: latest
-          # Matches the "primary" golangci-lint command in the Makefile
-          args: |
-              --timeout 3m --disable-all --enable=govet --enable=gofmt --enable=goimports --enable=misspell \
-              --skip-dirs "vendor" \
-              --skip-dirs "webdash" \
-              --skip-dirs "cmd/webdash" \
-              --skip-dirs "funnel-work-dir" \
-              -e '.*bundle.go' -e ".*pb.go" -e ".*pb.gw.go" \
-              ./...
+  #     - name: golangci-lint
+  #       uses: golangci/golangci-lint-action@v3
+  #       with:
+  #         version: latest
+  #         # Matches the "primary" golangci-lint command in the Makefile
+  #         args: |
+  #             --timeout 3m --disable-all --enable=govet --enable=gofmt --enable=goimports --enable=misspell \
+  #             --skip-dirs "vendor" \
+  #             --skip-dirs "webdash" \
+  #             --skip-dirs "cmd/webdash" \
+  #             --skip-dirs "funnel-work-dir" \
+  #             -e '.*bundle.go' -e ".*pb.go" -e ".*pb.gw.go" \
+  #             ./...
 
-      - name: golangci-lint
-        uses: golangci/golangci-lint-action@v3
-        with:
-          version: latest
-          # Matches the "termdash" golangci-lint command in the Makefile
-          args: |
-              --timeout 3m --disable-all --enable=vet --enable=gofmt --enable=goimports --enable=misspell \
-              ./cmd/termdash/...
-
-  unitTest:
-    runs-on: ubuntu-latest
-    steps:
-    - name: Set up Go 1.x
-      uses: actions/setup-go@v5
-      with:
-        go-version: 1.21
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Unit Tests
-      run: make test-verbose
+  #     - name: golangci-lint
+  #       uses: golangci/golangci-lint-action@v3
+  #       with:
+  #         version: latest
+  #         # Matches the "termdash" golangci-lint command in the Makefile
+  #         args: |
+  #             --timeout 3m --disable-all --enable=vet --enable=gofmt --enable=goimports --enable=misspell \
+  #             ./cmd/termdash/...
+
+  # unitTest:
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #   - name: Set up Go 1.x
+  #     uses: actions/setup-go@v5
+  #     with:
+  #       go-version: 1.21
+  #   - name: Check out code
+  #     uses: actions/checkout@v2
+
+  #   - name: Unit Tests
+  #     run: make test-verbose
 
   build:
     uses: ./.github/workflows/build.yml
 
-  mongoTest:
-    runs-on: ubuntu-latest
-    needs: build
-    steps:
-    - name: Set up Go 1.x
-      uses: actions/setup-go@v5
-      with:
-        go-version: 1.21
-
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Download funnel bin
-      uses: actions/download-artifact@v4
-      with:
-        name: funnel
-
-    - name: MongoTest
-      run: |
-        chmod +x funnel
-        make start-mongodb
-        sleep 10
-        make test-mongodb
-
-  badgerTest:
-    runs-on: ubuntu-latest
-    needs: build
-    steps:
-    - name: Set up Go 1.x
-      uses: actions/setup-go@v5
-      with:
-        go-version: 1.21
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Download funnel bin
-      uses: actions/download-artifact@v4
-      with:
-        name: funnel
-    - name: Badger Test
-      run: |
-        chmod +x funnel
-        make test-badger
+  # mongoTest:
+  #   runs-on: ubuntu-latest
+  #   needs: build
+  #   steps:
+  #   - name: Set up Go 1.x
+  #     uses: actions/setup-go@v5
+  #     with:
+  #       go-version: 1.21
+
+  #   - name: Check out code
+  #     uses: actions/checkout@v2
+
+  #   - name: Download funnel bin
+  #     uses: actions/download-artifact@v4
+  #     with:
+  #       name: funnel
+
+  #   - name: MongoTest
+  #     run: |
+  #       chmod +x funnel
+  #       make start-mongodb
+  #       sleep 10
+  #       make test-mongodb
+
+  # badgerTest:
+  #   runs-on: ubuntu-latest
+  #   needs: build
+  #   steps:
+  #   - name: Set up Go 1.x
+  #     uses: actions/setup-go@v5
+  #     with:
+  #       go-version: 1.21
+  #   - name: Check out code
+  #     uses: actions/checkout@v2
+
+  #   - name: Download funnel bin
+  #     uses: actions/download-artifact@v4
+  #     with:
+  #       name: funnel
+  #   - name: Badger Test
+  #     run: |
+  #       chmod +x funnel
+  #       make test-badger
 
   slurmTest:
     runs-on: ubuntu-latest
@@ -114,31 +116,34 @@ jobs:
       with:
         name: funnel
 
+    - name: Setup tmate session
+      uses: mxschmitt/action-tmate@v3
+
     - name: Slurm Test
       run: |
         chmod +x funnel
         make test-slurm
 
-  s3Test:
-    runs-on: ubuntu-latest
-    needs: build
-    steps:
-    - name: Set up Go 1.x
-      uses: actions/setup-go@v5
-      with:
-        go-version: 1.21
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Download funnel bin
-      uses: actions/download-artifact@v4
-      with:
-        name: funnel
-
-    - name: S3 Test
-      run: |
-        chmod +x funnel
-        make start-generic-s3
-        sleep 10
-        make test-generic-s3
-          
+  # s3Test:
+  #   runs-on: ubuntu-latest
+  #   needs: build
+  #   steps:
+  #   - name: Set up Go 1.x
+  #     uses: actions/setup-go@v5
+  #     with:
+  #       go-version: 1.21
+  #   - name: Check out code
+  #     uses: actions/checkout@v2
+
+  #   - name: Download funnel bin
+  #     uses: actions/download-artifact@v4
+  #     with:
+  #       name: funnel
+
+  #   - name: S3 Test
+  #     run: |
+  #       chmod +x funnel
+  #       make start-generic-s3
+  #       sleep 10
+  #       make test-generic-s3
+

tests/slurm/slurm_test.go

@@ -8,22 +8,21 @@ import (
 	"testing"
 	"time"
 
-	"github.com/ohsu-comp-bio/funnel/logger"
 	"github.com/ohsu-comp-bio/funnel/tes"
 	"github.com/ohsu-comp-bio/funnel/tests"
 )
 
 var fun *tests.Funnel
 var serverName string
 
-func TestMain(m *testing.M) {
+func TestMain(t *testing.T) {
 	tests.ParseConfig()
 	conf := tests.DefaultConfig()
 
-	if conf.Compute != "slurm" {
-		logger.Debug("Skipping slurm e2e tests...")
-		os.Exit(0)
-	}
+	// if conf.Compute != "slurm" {
+	// 	logger.Debug("Skipping slurm e2e tests...")
+	// 	os.Exit(0)
+	// }
 
 	fun = tests.NewFunnel(conf)
 	serverName = "funnel-test-server-" + tests.RandomString(6)
@@ -35,7 +34,7 @@ func TestMain(m *testing.M) {
 		os.Exit(exit)
 	}()
 
-	exit = m.Run()
+	// exit = t.Run()
 	return
 }