Merge branch 'develop' into feature/enable-tags #373
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Nextflow Test | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| build: | |
| uses: ./.github/workflows/build.yml | |
| nextflow: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download Funnel | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: funnel | |
| - name: Start Funnel | |
| run: | | |
| chmod +x ./funnel | |
| ./funnel server --LocalStorage.AllowedDirs $HOME run & | |
| - name: Install Nextflow | |
| run: | | |
| git clone https://github.com/nextflow-io/nextflow | |
| cd nextflow | |
| make compile | |
| - name: Install nf-canary and GA4GH-TES plugin | |
| run: | | |
| git clone https://github.com/seqeralabs/nf-canary | |
| cd nf-canary | |
| cat <<EOF >> nextflow.config | |
| plugins { | |
| id 'nf-ga4gh' | |
| } | |
| process.executor = 'tes' | |
| tes.endpoint = 'http://localhost:8000' | |
| EOF | |
| - name: Run nf-canary tests | |
| run: | | |
| ./nextflow/nextflow run nf-canary/main.nf |