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  1. TITAN TITAN Public

    Alex Chitsazan's package TITAN for scRNA-seq (Topic Inference of Transcriptionally Associated Networks), an unsupervised Bayesian topic modelling based approach utilizing Latent Dirichlet Allocatio…

    R 3 1

  2. unidex unidex Public

    python implementation of a universal demultiplexer built in mind for combinatorial indexing

    Python 3

  3. WGS-nextflow-workflow WGS-nextflow-workflow Public

    Nextflow 3 1

  4. cfRNA-seq-pipeline-Ngo-manuscript-2019 cfRNA-seq-pipeline-Ngo-manuscript-2019 Public

    This pipeline contains the data processing steps used for Thuy Ngo's 2019 cell-free RNA manuscript

    R 2 5

  5. cfRNA-seq-pipeline cfRNA-seq-pipeline Public

    Forked from JEstabrook/Omics-QC-pipeline

    Pipeline to assess quality of Omics datasets

    R 1 2

  6. scRNA-tools scRNA-tools Public

    This repository includes many single-cell R scripts for analysis and visualization single-cell data

    R 1

Repositories

Showing 10 of 38 repositories
  • SlurmStats Public

    Tools to study sacct data to optimize Slurm Jobs

    ohsu-cedar-comp-hub/SlurmStats’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 3, 2024
  • ohsu-cedar-comp-hub/WGS-nextflow-workflow’s past year of commit activity
    Nextflow 3 Apache-2.0 1 13 3 Updated Oct 3, 2024
  • ohsu-cedar-comp-hub/DataMgtTools’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 1, 2024
  • qupath_monaillabel_plugin Public Forked from qupath/qupath

    QuPath - Bioimage analysis & digital pathology

    ohsu-cedar-comp-hub/qupath_monaillabel_plugin’s past year of commit activity
    Java 0 GPL-3.0 283 0 0 Updated Sep 28, 2024
  • dynamical-cell-systems-group Public

    Data analysis and data handling pipelines for live-cell imaging, work in progress.

    ohsu-cedar-comp-hub/dynamical-cell-systems-group’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 11, 2024
  • TITAN Public

    Alex Chitsazan's package TITAN for scRNA-seq (Topic Inference of Transcriptionally Associated Networks), an unsupervised Bayesian topic modelling based approach utilizing Latent Dirichlet Allocation (LDA

    ohsu-cedar-comp-hub/TITAN’s past year of commit activity
    R 3 GPL-3.0 1 0 0 Updated Sep 5, 2024
  • ohsu-cedar-comp-hub/scRNA_SMARTseq2’s past year of commit activity
    HTML 1 2 0 0 Updated Aug 6, 2024
  • ohsu-cedar-comp-hub/2024_ngolab_cfRNA’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Aug 2, 2024
  • ohsu-cedar-comp-hub/scNMT_NOMeWorkFlow’s past year of commit activity
    HTML 0 1 0 0 Updated Jun 28, 2024
  • DTRON2 Public

    DTRON Follow on project - Investigating the spatial interactions of neural and immune cells in localized prostate cancer via new image analysis tools

    ohsu-cedar-comp-hub/DTRON2’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 1, 2024

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