Adresses #3215 NTRs ureter

[aleixpuigb]

Adresses #3215 NTRs ureter.
Thir PR includes the three segments of the ureter, and subclasses for right and left for each segment.

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-09-02/uberon-base.owl
• Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-main.owl/uberon-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-09-02/uberon-base.owl
• Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-pr.owl/uberon-base.owl

Ontology imports

Ontology annotations

distal ureter http://purl.obolibrary.org/obo/UBERON_8600109

Added

• distal ureter label "distal ureter"

• distal ureter id "UBERON:8600109"

• distal ureter hasOBONamespace "uberon"

• distal ureter contributor X

• distal ureter contributor 0000-0001-7655-4833

• distal ureter date "2024-08-28T14:15:03Z"^^dateTime

• distal ureter contributor 0000-0001-6677-8489

• distal ureter contributor 0000-0002-4341-3265

• distal ureter hasExactSynonym "lower ureter"

  • hasDbXref "PMID:30422575"

• distal ureter hasDbXref "FMA:15883"

• distal ureter hasExactSynonym "pelvic ureter"

  • hasDbXref "PMID:30422575"

• distal ureter IAO_0000115 "A segment of the ureter that extends from the common iliac artery bifurcation to the bladder. From there, the ureter curves back and follows the lateral pelvic wall inferiorly to connect with the posterolateral bladder wall."

  • hasDbXref "PMID:30422575"

• Class: distal ureter

• distal ureter SubClassOf mesoderm-derived structure

• distal ureter SubClassOf RO_0002150 some proximal ureter

• distal ureter SubClassOf BFO_0000050 some ureter

• distal ureter SubClassOf RO_0002150 some intramural ureter

• distal ureter SubClassOf excretory tube

intramural ureter http://purl.obolibrary.org/obo/UBERON_8600110

Added

• intramural ureter contributor 0000-0001-6677-8489

• intramural ureter contributor X

• intramural ureter hasExactSynonym "intravesical ureter"

  • hasDbXref "PMID:33085409"

  • hasDbXref "doi:10.53347/rID-23183"

• intramural ureter date "2024-08-28T14:39:53Z"^^dateTime

• intramural ureter hasDbXref "FMA:77289"

• intramural ureter label "intramural ureter"

• intramural ureter IAO_0000115 "The terminal segment of the ureter that is continuous with the distal ureter, lies where the ureter enters the bladder and extends within the bladder wall. The intramural ureter is aperistaltic, serving as a reflux-preventing mechanism, preventing the backflow of urine from the bladder into the ureters."

  • hasDbXref "PMID:14142154"

  • hasDbXref "PMID:30422575"

• intramural ureter contributor 0000-0001-7655-4833

• intramural ureter hasOBONamespace "uberon"

• intramural ureter contributor 0000-0002-4341-3265

• intramural ureter id "UBERON:8600110"

• Class: intramural ureter

• intramural ureter SubClassOf excretory tube

• intramural ureter SubClassOf mesoderm-derived structure

• intramural ureter SubClassOf RO_0002150 some distal ureter

• intramural ureter SubClassOf BFO_0000050 some ureter

left distal ureter http://purl.obolibrary.org/obo/UBERON_8600112

Added

• left distal ureter id "UBERON:8600112"

• left distal ureter contributor 0000-0001-7655-4833

• left distal ureter contributor 0000-0002-4341-3265

• left distal ureter contributor X

• left distal ureter IAO_0000115 "A distal ureter that is part of the left ureter."

  • hasDbXref "PMID:30422575"

• left distal ureter hasOBONamespace "uberon"

• left distal ureter hasDbXref "FMA:15887"

• left distal ureter date "2024-08-28T15:15:32Z"^^dateTime

• left distal ureter hasExactSynonym "left pelvic ureter"

  • hasDbXref "PMID:30422575"

• left distal ureter hasExactSynonym "left lower ureter"

  • hasDbXref "PMID:30422575"

• left distal ureter contributor 0000-0001-6677-8489

• left distal ureter label "left distal ureter"

• Class: left distal ureter

• left distal ureter EquivalentTo distal ureter and (BFO_0000050 some left ureter)

• left distal ureter SubClassOf distal ureter

• left distal ureter SubClassOf BFO_0000050 some left ureter

• left distal ureter SubClassOf RO_0002150 some left proximal ureter

• left distal ureter SubClassOf RO_0002150 some left intramural ureter

left intramural ureter http://purl.obolibrary.org/obo/UBERON_8600116

Added

• left intramural ureter hasOBONamespace "uberon"

• left intramural ureter contributor 0000-0001-6677-8489

• left intramural ureter label "left intramural ureter"

• left intramural ureter contributor 0000-0001-7655-4833

• left intramural ureter date "2024-08-28T16:10:50Z"^^dateTime

• left intramural ureter id "UBERON:8600116"

• left intramural ureter IAO_0000115 "An intramural ureter that is part of the left ureter."

  • hasDbXref "PMID:30422575"

• left intramural ureter hasExactSynonym "left intravesical ureter"

  • hasDbXref "doi:10.53347/rID-23183"

• left intramural ureter contributor 0000-0002-4341-3265

• left intramural ureter contributor X

• Class: left intramural ureter

• left intramural ureter EquivalentTo intramural ureter and (BFO_0000050 some left ureter)

• left intramural ureter SubClassOf BFO_0000050 some left ureter

• left intramural ureter SubClassOf RO_0002150 some left distal ureter

• left intramural ureter SubClassOf intramural ureter

left proximal ureter http://purl.obolibrary.org/obo/UBERON_8600114

Added

• left proximal ureter hasExactSynonym "left upper ureter"

  • hasDbXref "PMID:30422575"

• left proximal ureter hasDbXref "FMA:15885"

• left proximal ureter label "left proximal ureter"

• left proximal ureter IAO_0000115 "A proximal ureter that is part of the left ureter."

  • hasDbXref "PMID:30422575"

• left proximal ureter contributor 0000-0001-7655-4833

• left proximal ureter contributor 0000-0002-4341-3265

• left proximal ureter hasOBONamespace "uberon"

• left proximal ureter date "2024-08-28T15:19:51Z"^^dateTime

• left proximal ureter contributor X

• left proximal ureter hasExactSynonym "left abdominal ureter"

  • hasDbXref "PMID:30422575"

• left proximal ureter contributor 0000-0001-6677-8489

• left proximal ureter id "UBERON:8600114"

• Class: left proximal ureter

• left proximal ureter EquivalentTo proximal ureter and (BFO_0000050 some left ureter)

• left proximal ureter SubClassOf BFO_0000050 some left ureter

• left proximal ureter SubClassOf RO_0002150 some left distal ureter

• left proximal ureter SubClassOf proximal ureter

proximal ureter http://purl.obolibrary.org/obo/UBERON_8600108

Added

• proximal ureter hasDbXref "FMA:15882"

• proximal ureter id "UBERON:8600108"

• proximal ureter hasExactSynonym "upper ureter"

  • hasDbXref "PMID:30422575"

• proximal ureter contributor 0000-0002-4341-3265

• proximal ureter contributor 0000-0001-6677-8489

• proximal ureter hasOBONamespace "uberon"

• proximal ureter contributor X

• proximal ureter hasExactSynonym "abdominal ureter"

  • hasDbXref "PMID:30422575"

• proximal ureter contributor 0000-0001-7655-4833

• proximal ureter IAO_0000115 "A segment of the ureter that extends from the renal pelvis to the common iliac artery bifurcation (to form the internal and external iliac arteries)."

  • hasDbXref "PMID:30422575"

• proximal ureter label "proximal ureter"

• proximal ureter date "2024-08-28T13:51:59Z"^^dateTime

• Class: proximal ureter

• proximal ureter SubClassOf excretory tube

• proximal ureter SubClassOf BFO_0000050 some ureter

• proximal ureter SubClassOf mesoderm-derived structure

• proximal ureter SubClassOf RO_0002150 some distal ureter

right distal ureter http://purl.obolibrary.org/obo/UBERON_8600111

Added

• right distal ureter hasOBONamespace "uberon"

• right distal ureter id "UBERON:8600111"

• right distal ureter contributor 0000-0002-4341-3265

• right distal ureter contributor X

• right distal ureter date "2024-08-28T15:12:29Z"^^dateTime

• right distal ureter hasDbXref "FMA:15886"

• right distal ureter hasExactSynonym "right pelvic ureter"

  • hasDbXref "PMID:30422575"

• right distal ureter hasExactSynonym "right lower ureter"

  • hasDbXref "PMID:30422575"

• right distal ureter label "right distal ureter"

• right distal ureter contributor 0000-0001-6677-8489

• right distal ureter IAO_0000115 "A distal ureter that is part of the right ureter."

  • hasDbXref "PMID:30422575"

• right distal ureter contributor 0000-0001-7655-4833

• Class: right distal ureter

• right distal ureter EquivalentTo distal ureter and (BFO_0000050 some right ureter)

• right distal ureter SubClassOf BFO_0000050 some right ureter

• right distal ureter SubClassOf RO_0002150 some right proximal ureter

• right distal ureter SubClassOf distal ureter

• right distal ureter SubClassOf RO_0002150 some right intramural ureter

right intramural ureter http://purl.obolibrary.org/obo/UBERON_8600115

Added

• right intramural ureter label "right intramural ureter"

• right intramural ureter contributor X

• right intramural ureter id "UBERON:8600115"

• right intramural ureter hasExactSynonym "right intravesical ureter"

  • hasDbXref "doi:10.53347/rID-23183"

• right intramural ureter hasOBONamespace "uberon"

• right intramural ureter IAO_0000115 "An intramural ureter that is part of the right ureter."

  • hasDbXref "PMID:30422575"

• right intramural ureter date "2024-08-28T16:10:44Z"^^dateTime

• right intramural ureter contributor 0000-0002-4341-3265

• right intramural ureter contributor 0000-0001-7655-4833

• right intramural ureter contributor 0000-0001-6677-8489

• Class: right intramural ureter

• right intramural ureter EquivalentTo intramural ureter and (BFO_0000050 some right ureter)

• right intramural ureter SubClassOf RO_0002150 some right distal ureter

• right intramural ureter SubClassOf BFO_0000050 some right ureter

• right intramural ureter SubClassOf intramural ureter

right proximal ureter http://purl.obolibrary.org/obo/UBERON_8600113

Added

• right proximal ureter hasOBONamespace "uberon"

• right proximal ureter label "right proximal ureter"

• right proximal ureter hasExactSynonym "right abdominal ureter"

  • hasDbXref "PMID:30422575"

• right proximal ureter contributor 0000-0002-4341-3265

• right proximal ureter hasDbXref "FMA:15884"

• right proximal ureter date "2024-08-28T15:19:31Z"^^dateTime

• right proximal ureter contributor 0000-0001-7655-4833

• right proximal ureter id "UBERON:8600113"

• right proximal ureter hasExactSynonym "right upper ureter"

  • hasDbXref "PMID:30422575"

• right proximal ureter contributor X

• right proximal ureter contributor 0000-0001-6677-8489

• right proximal ureter IAO_0000115 "A proximal ureter that is part of the right ureter."

  • hasDbXref "PMID:30422575"

• Class: right proximal ureter

• right proximal ureter EquivalentTo proximal ureter and (BFO_0000050 some right ureter)

• right proximal ureter SubClassOf BFO_0000050 some right ureter

• right proximal ureter SubClassOf RO_0002150 some right distal ureter

• right proximal ureter SubClassOf proximal ureter

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/__w/uberon/uberon/master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/__w/uberon/uberon/branch/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

distal ureter http://purl.obolibrary.org/obo/UBERON_8600109

Added

• distal ureter label "distal ureter"^^string

• distal ureter id "UBERON:8600109"^^string

• distal ureter has_obo_namespace "uberon"^^string

• distal ureter contributor Sanjay Jain

• distal ureter contributor Ellen Quardokus

• distal ureter date "2024-08-28T14:15:03Z"^^dateTime

• distal ureter contributor Aleix Puig-Barbé

• distal ureter contributor 0000-0002-4341-3265

• distal ureter has_exact_synonym "lower ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• distal ureter database_cross_reference "FMA:15883"^^string

• distal ureter has_exact_synonym "pelvic ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• distal ureter definition "A segment of the ureter that extends from the common iliac artery bifurcation to the bladder. From there, the ureter curves back and follows the lateral pelvic wall inferiorly to connect with the posterolateral bladder wall."^^string

  • database_cross_reference "PMID:30422575"^^string

• Class: distal ureter

• distal ureter SubClassOf continuous with some proximal ureter

• distal ureter SubClassOf part of some ureter

• distal ureter SubClassOf continuous with some intramural ureter

• distal ureter SubClassOf excretory tube

intramural ureter http://purl.obolibrary.org/obo/UBERON_8600110

Added

• intramural ureter contributor Aleix Puig-Barbé

• intramural ureter contributor Sanjay Jain

• intramural ureter has_exact_synonym "intravesical ureter"^^string

  • database_cross_reference "doi:10.53347/rID-23183"^^string

  • database_cross_reference "PMID:33085409"^^string

• intramural ureter date "2024-08-28T14:39:53Z"^^dateTime

• intramural ureter database_cross_reference "FMA:77289"^^string

• intramural ureter label "intramural ureter"^^string

• intramural ureter definition "The terminal segment of the ureter that is continuous with the distal ureter, lies where the ureter enters the bladder and extends within the bladder wall. The intramural ureter is aperistaltic, serving as a reflux-preventing mechanism, preventing the backflow of urine from the bladder into the ureters."^^string

  • database_cross_reference "PMID:30422575"^^string

  • database_cross_reference "PMID:14142154"^^string

• intramural ureter contributor Ellen Quardokus

• intramural ureter has_obo_namespace "uberon"^^string

• intramural ureter contributor 0000-0002-4341-3265

• intramural ureter id "UBERON:8600110"^^string

• Class: intramural ureter

• intramural ureter SubClassOf excretory tube

• intramural ureter SubClassOf continuous with some distal ureter

• intramural ureter SubClassOf part of some ureter

left distal ureter http://purl.obolibrary.org/obo/UBERON_8600112

Added

• left distal ureter id "UBERON:8600112"^^string

• left distal ureter contributor Ellen Quardokus

• left distal ureter contributor 0000-0002-4341-3265

• left distal ureter contributor Sanjay Jain

• left distal ureter definition "A distal ureter that is part of the left ureter."^^string

  • database_cross_reference "PMID:30422575"^^string

• left distal ureter has_obo_namespace "uberon"^^string

• left distal ureter database_cross_reference "FMA:15887"^^string

• left distal ureter date "2024-08-28T15:15:32Z"^^dateTime

• left distal ureter has_exact_synonym "left pelvic ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• left distal ureter has_exact_synonym "left lower ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• left distal ureter contributor Aleix Puig-Barbé

• left distal ureter label "left distal ureter"^^string

• Class: left distal ureter

• left distal ureter EquivalentTo distal ureter and (part of some left ureter)

• left distal ureter SubClassOf continuous with some left proximal ureter

• left distal ureter SubClassOf continuous with some left intramural ureter

left intramural ureter http://purl.obolibrary.org/obo/UBERON_8600116

Added

• left intramural ureter has_obo_namespace "uberon"^^string

• left intramural ureter contributor Aleix Puig-Barbé

• left intramural ureter label "left intramural ureter"^^string

• left intramural ureter contributor Ellen Quardokus

• left intramural ureter date "2024-08-28T16:10:50Z"^^dateTime

• left intramural ureter id "UBERON:8600116"^^string

• left intramural ureter definition "An intramural ureter that is part of the left ureter."^^string

  • database_cross_reference "PMID:30422575"^^string

• left intramural ureter has_exact_synonym "left intravesical ureter"^^string

  • database_cross_reference "doi:10.53347/rID-23183"^^string

• left intramural ureter contributor 0000-0002-4341-3265

• left intramural ureter contributor Sanjay Jain

• Class: left intramural ureter

• left intramural ureter EquivalentTo intramural ureter and (part of some left ureter)

• left intramural ureter SubClassOf continuous with some left distal ureter

left proximal ureter http://purl.obolibrary.org/obo/UBERON_8600114

Added

• left proximal ureter has_exact_synonym "left upper ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• left proximal ureter database_cross_reference "FMA:15885"^^string

• left proximal ureter label "left proximal ureter"^^string

• left proximal ureter id "UBERON:8600114"^^string

• left proximal ureter definition "A proximal ureter that is part of the left ureter."^^string

  • database_cross_reference "PMID:30422575"^^string

• left proximal ureter contributor Ellen Quardokus

• left proximal ureter contributor 0000-0002-4341-3265

• left proximal ureter has_obo_namespace "uberon"^^string

• left proximal ureter date "2024-08-28T15:19:51Z"^^dateTime

• left proximal ureter contributor Sanjay Jain

• left proximal ureter has_exact_synonym "left abdominal ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• left proximal ureter contributor Aleix Puig-Barbé

• Class: left proximal ureter

• left proximal ureter EquivalentTo proximal ureter and (part of some left ureter)

• left proximal ureter SubClassOf continuous with some left distal ureter

proximal ureter http://purl.obolibrary.org/obo/UBERON_8600108

Added

• proximal ureter database_cross_reference "FMA:15882"^^string

• proximal ureter id "UBERON:8600108"^^string

• proximal ureter has_exact_synonym "upper ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• proximal ureter contributor 0000-0002-4341-3265

• proximal ureter contributor Aleix Puig-Barbé

• proximal ureter has_obo_namespace "uberon"^^string

• proximal ureter contributor Sanjay Jain

• proximal ureter has_exact_synonym "abdominal ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• proximal ureter contributor Ellen Quardokus

• proximal ureter definition "A segment of the ureter that extends from the renal pelvis to the common iliac artery bifurcation (to form the internal and external iliac arteries)."^^string

  • database_cross_reference "PMID:30422575"^^string

• proximal ureter label "proximal ureter"^^string

• proximal ureter date "2024-08-28T13:51:59Z"^^dateTime

• Class: proximal ureter

• proximal ureter SubClassOf excretory tube

• proximal ureter SubClassOf part of some ureter

• proximal ureter SubClassOf continuous with some distal ureter

right distal ureter http://purl.obolibrary.org/obo/UBERON_8600111

Added

• right distal ureter has_obo_namespace "uberon"^^string

• right distal ureter id "UBERON:8600111"^^string

• right distal ureter label "right distal ureter"^^string

• right distal ureter contributor 0000-0002-4341-3265

• right distal ureter contributor Sanjay Jain

• right distal ureter date "2024-08-28T15:12:29Z"^^dateTime

• right distal ureter database_cross_reference "FMA:15886"^^string

• right distal ureter has_exact_synonym "right pelvic ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• right distal ureter has_exact_synonym "right lower ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• right distal ureter contributor Aleix Puig-Barbé

• right distal ureter definition "A distal ureter that is part of the right ureter."^^string

  • database_cross_reference "PMID:30422575"^^string

• right distal ureter contributor Ellen Quardokus

• Class: right distal ureter

• right distal ureter EquivalentTo distal ureter and (part of some right ureter)

• right distal ureter SubClassOf continuous with some right proximal ureter

• right distal ureter SubClassOf continuous with some right intramural ureter

right intramural ureter http://purl.obolibrary.org/obo/UBERON_8600115

Added

• right intramural ureter label "right intramural ureter"^^string

• right intramural ureter contributor Sanjay Jain

• right intramural ureter id "UBERON:8600115"^^string

• right intramural ureter has_exact_synonym "right intravesical ureter"^^string

  • database_cross_reference "doi:10.53347/rID-23183"^^string

• right intramural ureter has_obo_namespace "uberon"^^string

• right intramural ureter definition "An intramural ureter that is part of the right ureter."^^string

  • database_cross_reference "PMID:30422575"^^string

• right intramural ureter date "2024-08-28T16:10:44Z"^^dateTime

• right intramural ureter contributor 0000-0002-4341-3265

• right intramural ureter contributor Ellen Quardokus

• right intramural ureter contributor Aleix Puig-Barbé

• Class: right intramural ureter

• right intramural ureter EquivalentTo intramural ureter and (part of some right ureter)

• right intramural ureter SubClassOf continuous with some right distal ureter

right proximal ureter http://purl.obolibrary.org/obo/UBERON_8600113

Added

• right proximal ureter has_obo_namespace "uberon"^^string

• right proximal ureter label "right proximal ureter"^^string

• right proximal ureter has_exact_synonym "right abdominal ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• right proximal ureter contributor 0000-0002-4341-3265

• right proximal ureter database_cross_reference "FMA:15884"^^string

• right proximal ureter date "2024-08-28T15:19:31Z"^^dateTime

• right proximal ureter contributor Ellen Quardokus

• right proximal ureter id "UBERON:8600113"^^string

• right proximal ureter has_exact_synonym "right upper ureter"^^string

  • database_cross_reference "PMID:30422575"^^string

• right proximal ureter contributor Sanjay Jain

• right proximal ureter contributor Aleix Puig-Barbé

• right proximal ureter definition "A proximal ureter that is part of the right ureter."^^string

  • database_cross_reference "PMID:30422575"^^string

• Class: right proximal ureter

• right proximal ureter EquivalentTo proximal ureter and (part of some right ureter)

• right proximal ureter SubClassOf continuous with some right distal ureter

[Caroline-99]

#gogoeditdiff

[Caroline-99]

#gogoeditdiff