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Lung hackathon - epithelial cells (#2402)
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* Changes in respiratory epithelial cell

Create equivalentTo in endo-epithelial cell and fix 'respiratory epithelial cell'

* Partial refactor of epithelial cells

* Changing lung epithelial cells to follow standard pattern

'epitihelial cell'
part_of some { subclass of 'resipratory epithelium' }
- Important to look for non-local effects on classification

* Moved tb goblet cell to be part of membrane

Moved

* Fix bronchioalveolar cell part_of two different locations

- Import bronchoalveolar duct junction

* lung goblet cell part of some lung epithelium

---------

Co-authored-by: dosumis <[email protected]>
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@aleixpuigb @dosumis
aleixpuigb and dosumis authored Jul 9, 2024
1 parent a9b53ad commit aaaa83d
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Showing 6 changed files with 44 additions and 35 deletions.
1 change: 0 additions & 1 deletion src/mappings/zfa.sssom.tsv
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Expand Up @@ -3,7 +3,6 @@
# ZFA: "http://purl.obolibrary.org/obo/ZFA_"
#mapping_set_id: "http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv"
#license: "https://creativecommons.org/licenses/by/3.0/"
#subject_source: "http://purl.obolibrary.org/obo/zfa.owl"
subject_id subject_label predicate_id object_id mapping_justification mapping_cardinality
ZFA:0000003 adaxial cell semapv:crossSpeciesExactMatch CL:0007016 semapv:UnspecifiedMatching 1:1
ZFA:0000084 yolk semapv:crossSpeciesExactMatch CL:0000428 semapv:UnspecifiedMatching 1:1
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51 changes: 23 additions & 28 deletions src/ontology/cl-edit.owl
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Expand Up @@ -3141,6 +3141,7 @@ Declaration(Class(obo:UBERON_0004024))
Declaration(Class(obo:UBERON_0004026))
Declaration(Class(obo:UBERON_0004196))
Declaration(Class(obo:UBERON_0004197))
Declaration(Class(obo:UBERON_0004903))
Declaration(Class(obo:UBERON_0005101))
Declaration(Class(obo:UBERON_0005102))
Declaration(Class(obo:UBERON_0005378))
Expand Down Expand Up @@ -3257,7 +3258,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")

AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")

# Annotation Property: obo:IAO_0000700 (has ontology root term)
# Annotation Property: obo:IAO_0000700 (preferred_root)

AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")

Expand Down Expand Up @@ -3351,11 +3352,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)
# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")

# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)
# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

Expand Down Expand Up @@ -4247,8 +4248,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000082 "BTO:0004299")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000082 "lung epithelial cell")
AnnotationAssertion(rdfs:label obo:CL_0000082 "epithelial cell of lung")
EquivalentClasses(obo:CL_0000082 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)))
SubClassOf(obo:CL_0000082 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115))
EquivalentClasses(obo:CL_0000082 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115)))

# Class: obo:CL_0000083 (epithelial cell of pancreas)

Expand Down Expand Up @@ -14389,7 +14389,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002075 <https://orcid.org/0000-000
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002075 "2010-06-29T03:22:46Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0002075 "pulmonary brush cell")
AnnotationAssertion(rdfs:label obo:CL_0002075 "brush cell of tracheobronchial tree")
EquivalentClasses(obo:CL_0002075 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007196)))
EquivalentClasses(obo:CL_0002075 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008397)))

# Class: obo:CL_0002076 (endo-epithelial cell)

Expand All @@ -14398,8 +14398,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002076 <https://orcid.org/0000-000
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002076 "2010-06-29T03:38:14Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002076 "FMA:69075")
AnnotationAssertion(rdfs:label obo:CL_0002076 "endo-epithelial cell")
SubClassOf(obo:CL_0002076 obo:CL_0000066)
SubClassOf(obo:CL_0002076 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000223))
EquivalentClasses(obo:CL_0002076 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000223)))

# Class: obo:CL_0002077 (ecto-epithelial cell)

Expand Down Expand Up @@ -15739,8 +15738,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002202 <https://orcid.org/0000-000
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002202 "2010-09-02T02:09:14Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002202 "FMA:66816")
AnnotationAssertion(rdfs:label obo:CL_0002202 "epithelial cell of tracheobronchial tree")
EquivalentClasses(obo:CL_0002202 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007196)))
SubClassOf(obo:CL_0002202 obo:CL_0002632)
EquivalentClasses(obo:CL_0002202 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008397)))

# Class: obo:CL_0002203 (brush cell of epithelium proper of large intestine)

Expand Down Expand Up @@ -17555,8 +17553,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002368 "2010-09-23T04:38:49Z"
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002368 "BTO:0004533")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002368 "airway epithelial cell")
AnnotationAssertion(rdfs:label obo:CL_0002368 "respiratory epithelial cell")
EquivalentClasses(obo:CL_0002368 ObjectIntersectionOf(obo:CL_0002076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000065)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002368 obo:CL_0002076)
EquivalentClasses(obo:CL_0002368 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802)))
SubClassOf(obo:CL_0002368 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000223))

# Class: obo:CL_0002369 (fungal spore)

Expand All @@ -17574,7 +17572,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002370 <https://orcid.org/0000-000
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002370 "2010-09-23T04:42:27Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0010863") oboInOwl:hasExactSynonym obo:CL_0002370 "respiratory mucosa goblet cells")
AnnotationAssertion(rdfs:label obo:CL_0002370 "respiratory goblet cell")
EquivalentClasses(obo:CL_0002370 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000065)))
EquivalentClasses(obo:CL_0002370 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802)))
SubClassOf(obo:CL_0002370 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802))

# Class: obo:CL_0002371 (obsolete somatic cell)
Expand Down Expand Up @@ -20084,16 +20082,14 @@ SubClassOf(obo:CL_0002630 obo:CL_0000520)
AnnotationAssertion(terms:contributor obo:CL_0002631 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002631 "2011-06-21T12:28:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_0002631 "epithelial cell of upper respiratory tract")
EquivalentClasses(obo:CL_0002631 ObjectIntersectionOf(obo:CL_0002368 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001557)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002631 obo:CL_0002368)
EquivalentClasses(obo:CL_0002631 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004814)))

# Class: obo:CL_0002632 (epithelial cell of lower respiratory tract)

AnnotationAssertion(terms:contributor obo:CL_0002632 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002632 "2011-06-21T12:29:31Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_0002632 "epithelial cell of lower respiratory tract")
EquivalentClasses(obo:CL_0002632 ObjectIntersectionOf(obo:CL_0002368 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001558)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002632 obo:CL_0002368)
EquivalentClasses(obo:CL_0002632 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004815)))

# Class: obo:CL_0002633 (respiratory basal cell)

Expand All @@ -20103,8 +20099,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002633 "2011-06-21T03:11:10Z"
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002633 "airway basal cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002633 "airway basal stem cell")
AnnotationAssertion(rdfs:label obo:CL_0002633 "respiratory basal cell")
SubClassOf(obo:CL_0002633 obo:CL_0000646)
SubClassOf(obo:CL_0002633 obo:CL_0002368)
EquivalentClasses(obo:CL_0002633 ObjectIntersectionOf(obo:CL_0000646 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802)))

# Class: obo:CL_0002634 (epithelial cell of anal column)

Expand Down Expand Up @@ -20152,8 +20147,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002638 "2011-06-21T03:26:08Z"
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002638 "BASC")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002638 "basal epithelial cell of bronchioalveolar duct junction")
AnnotationAssertion(rdfs:label obo:CL_0002638 "bronchioalveolar stem cell")
EquivalentClasses(obo:CL_0002638 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001955) ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002638 obo:CL_0002633)
SubClassOf(obo:CL_0002638 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002051))
SubClassOf(obo:CL_0002638 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004903))

# Class: obo:CL_0002639 (amniotic stem cell)

Expand Down Expand Up @@ -24442,7 +24438,7 @@ SubClassOf(obo:CL_0015000 obo:CL_0000100)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30069044") Annotation(oboInOwl:hasDbXref "PMID:30069046") obo:IAO_0000115 obo:CL_0017000 "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice.")
AnnotationAssertion(terms:contributor obo:CL_0017000 <https://orcid.org/0000-0003-2473-2313>)
AnnotationAssertion(rdfs:label obo:CL_0017000 "pulmonary ionocyte")
SubClassOf(obo:CL_0017000 obo:CL_0000082)
EquivalentClasses(obo:CL_0017000 ObjectIntersectionOf(obo:CL_0005006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115)))
SubClassOf(obo:CL_0017000 obo:CL_0005006)

# Class: obo:CL_0017001 (splanchnic mesodermal cell)
Expand Down Expand Up @@ -24649,7 +24645,7 @@ AnnotationAssertion(terms:date obo:CL_0019003 "2020-05-07T18:14:52Z"^^xsd:dateTi
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0019003 "goblet cell of tracheobronchial tree")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0019003 cl:added_for_HCA)
AnnotationAssertion(rdfs:label obo:CL_0019003 "tracheobronchial goblet cell"@en)
EquivalentClasses(obo:CL_0019003 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007196)))
EquivalentClasses(obo:CL_0019003 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008397)))

# Class: obo:CL_0019015 (lung parenchyma resident eosinophil)

Expand Down Expand Up @@ -24834,7 +24830,7 @@ EquivalentClasses(obo:CL_1000123 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeV
# Class: obo:CL_1000143 (lung goblet cell)

AnnotationAssertion(rdfs:label obo:CL_1000143 "lung goblet cell")
EquivalentClasses(obo:CL_1000143 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)))
EquivalentClasses(obo:CL_1000143 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115)))

# Class: obo:CL_1000147 (cardiac valve cell)

Expand Down Expand Up @@ -30795,8 +30791,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0001-7
AnnotationAssertion(terms:date obo:CL_4030023 "2022-06-06T08:31:09Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_4030023 "hillock cell of respiratory tract")
AnnotationAssertion(rdfs:label obo:CL_4030023 "respiratory hillock cell")
EquivalentClasses(obo:CL_4030023 ObjectIntersectionOf(obo:CL_4030024 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000065)))
SubClassOf(obo:CL_4030023 obo:CL_0002368)
EquivalentClasses(obo:CL_4030023 ObjectIntersectionOf(obo:CL_4030024 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802)))

# Class: obo:CL_4030024 (hillock cell)

Expand Down Expand Up @@ -31696,7 +31691,7 @@ AnnotationAssertion(terms:contributor obo:CL_4033044 <https://orcid.org/0000-000
AnnotationAssertion(terms:date obo:CL_4033044 "2023-06-20T10:27:17Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31558434") Annotation(oboInOwl:hasDbXref "PMID:331922198") Annotation(oboInOwl:hasDbXref "PMID:36883528") rdfs:comment obo:CL_4033044 "In humans, deuterosomal cells have been noted to have enriched expression of the following: PLK4, FOXJ1, DEUP1, FOXN4, YPEL1, HES6 and CDC20B. Deuterosomal cells were termed after deuterosomes, the platforms of active centriole amplification.")
AnnotationAssertion(rdfs:label obo:CL_4033044 "deuterosomal cell")
SubClassOf(obo:CL_4033044 obo:CL_0002368)
SubClassOf(obo:CL_4033044 obo:CL_0000066)
SubClassOf(obo:CL_4033044 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802))

# Class: obo:CL_4033045 (lung migratory dendritic cell)
Expand Down Expand Up @@ -31742,7 +31737,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25564622") oboInOwl:hasE
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25658372") oboInOwl:hasExactSynonym obo:CL_4033048 "respiratory suprabasal progenitor cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25658372") Annotation(oboInOwl:hasDbXref "doi:10.1101/2023.04.20.537495") rdfs:comment obo:CL_4033048 "In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3.")
AnnotationAssertion(rdfs:label obo:CL_4033048 "respiratory suprabasal cell")
SubClassOf(obo:CL_4033048 obo:CL_0002368)
SubClassOf(obo:CL_4033048 obo:CL_0000066)
SubClassOf(obo:CL_4033048 obo:CL_0011026)
SubClassOf(obo:CL_4033048 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802))
SubClassOf(obo:CL_4033048 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002633))
Expand Down Expand Up @@ -32276,4 +32271,4 @@ SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945)) obo:CL_0000164)
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)) obo:CL_0000164)
SubClassOf(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/757>) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031))
)
)
2 changes: 1 addition & 1 deletion src/ontology/components/mappings.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4572,5 +4572,5 @@



<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->

18 changes: 16 additions & 2 deletions src/ontology/imports/merged_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/cl/releases/2024-07-04/imports/merged_import.owl>
Annotation(owl:versionInfo "2024-07-04")
<http://purl.obolibrary.org/obo/cl/releases/2024-07-09/imports/merged_import.owl>
Annotation(owl:versionInfo "2024-07-09")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
Expand Down Expand Up @@ -11153,6 +11153,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004894>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004895>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004901>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004902>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004903>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004904>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004905>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004906>))
Expand Down Expand Up @@ -186158,6 +186159,19 @@ SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0004902> <http://purl.obolibra
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0004902> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000164>))
SubClassOf(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "EHDAA2") <http://purl.obolibrary.org/obo/UBERON_0004902> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002202> <http://purl.obolibrary.org/obo/UBERON_0009846>))

# Class: <http://purl.obolibrary.org/obo/UBERON_0004903> (bronchoalveolar duct junction)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MP:0004390") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_0004903> "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP].")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "MA:th") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0004903> "EMAPA:37448")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_0004903> "uberon")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/UBERON_0004903> "UBERON:0004903")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_0004903> <http://purl.obolibrary.org/obo/uberon/core#pheno_slim>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_0004903> "bronchoalveolar duct junction")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0004903> <http://purl.obolibrary.org/obo/UBERON_0007651>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0004903> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001004>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0004903> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002176> <http://purl.obolibrary.org/obo/UBERON_0002173>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0004903> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002176> <http://purl.obolibrary.org/obo/UBERON_0002188>))

# Class: <http://purl.obolibrary.org/obo/UBERON_0004904> (neuron projection bundle connecting eye with brain)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://orcid.org/0000-0002-6601-2165") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_0004904> "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila.")
Expand Down
3 changes: 2 additions & 1 deletion src/ontology/imports/uberon_terms.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -48,4 +48,5 @@ UBERON:0001058
UBERON:0001038
UBERON:0000371
UBERON:0008198
UBERON:0004025
UBERON:0004025
UBERON:0004903
4 changes: 2 additions & 2 deletions src/patterns/definitions.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/cl/releases/2024-07-04/patterns/definitions.owl>
Annotation(owl:versionInfo "2024-07-04")
<http://purl.obolibrary.org/obo/cl/releases/2024-07-09/patterns/definitions.owl>
Annotation(owl:versionInfo "2024-07-09")



Expand Down

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