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Merge pull request #1154 from obophenotype/release-2021-06-29
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2021-06-29 Release
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@shawntanzk
shawntanzk authored Jun 29, 2021
2 parents a518b0d + 5dba9a0 commit 5888dee
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181 changes: 145 additions & 36 deletions cl-base.json
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99 changes: 45 additions & 54 deletions cl-base.obo
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244 changes: 196 additions & 48 deletions cl-base.owl
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133 changes: 110 additions & 23 deletions cl-basic.json
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Original file line number Diff line number Diff line change
Expand Up @@ -2378,6 +2378,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_0000693"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0000104",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_4023041"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0000104",
"pred": "is_a",
Expand Down Expand Up @@ -3353,11 +3358,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_0000314"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0000151",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_0000315"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0000151",
"pred": "is_a",
Expand Down Expand Up @@ -3463,6 +3463,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_1001509"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0000152",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/CL_0000315"
},
{
"obj": "http://purl.obolibrary.org/obo/CL_0000152",
"pred": "is_a",
Expand Down Expand Up @@ -18566,11 +18571,11 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-06-21"
"val": "2021-06-29"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/cl/releases/2021-06-21/cl-basic.json",
"version": "http://purl.obolibrary.org/obo/cl/releases/2021-06-29/cl-basic.json",
"xrefs": []
},
"nodes": [
Expand Down Expand Up @@ -21945,6 +21950,9 @@
"ISBN:0444009442"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"xrefs": [
{
"val": "FMA:67282"
Expand All @@ -21970,6 +21978,9 @@
"GOC:tfm"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"xrefs": [
{
"val": "FMA:67287"
Expand Down Expand Up @@ -22020,6 +22031,9 @@
"GOC:nv"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"xrefs": [
{
"val": "FMA:67278"
Expand Down Expand Up @@ -22309,7 +22323,10 @@
"xrefs": [
"WikipediaVersioned:Basket_cell&oldid=951703880"
]
}
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
},
Expand Down Expand Up @@ -22440,6 +22457,9 @@
"ISBN:9780123973481"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"xrefs": [
{
"val": "BTO:0002316"
Expand Down Expand Up @@ -29472,21 +29492,31 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_0000411",
"lbl": "flatworm hypodermal cell",
"lbl": "Caenorhabditis hypodermal cell",
"meta": {
"basicPropertyValues": [
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "cell"
}
],
"comments": [
"This term was originally added to CL for parity with the Worm anatomy ontology, which is dedicated to C elegans. It is not clear if it makes sense to try and generalize the concept and include in CL, and this term may be obsoleted in future. Note there is no similarity to the hypodermis in vertebrates."
],
"definition": {
"val": "An epithelial cell of the hypodermis of flatworms.",
"val": "An epithelial cell of the hypodermis of Caenorhabditis.",
"xrefs": [
"GOC:tfm",
"http://www.wormatlas.org/hermaphrodite/hypodermis/mainframe.htm"
]
},
"synonyms": [
{
"pred": "hasBroadSynonym",
"val": "roundworm hypodermal cell",
"xrefs": []
}
],
"xrefs": [
{
"val": "WBbt:0007846"
Expand Down Expand Up @@ -34625,6 +34655,9 @@
"MESH:A08.186.211.577.405.700"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"synonyms": [
{
"pred": "hasExactSynonym",
Expand Down Expand Up @@ -37212,6 +37245,9 @@
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "cell"
}
],
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
Expand Down Expand Up @@ -37260,6 +37296,9 @@
"PMID:17122314"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"synonyms": [
{
"pred": "hasExactSynonym",
Expand Down Expand Up @@ -92588,7 +92627,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023007",
"lbl": "L2/3 bipolar Vip expressing GABAergic cortical interneuron (Mus musculus)",
"lbl": "L2/3 bipolar Vip GABAergic cortical interneuron (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand Down Expand Up @@ -92808,7 +92847,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023014",
"lbl": "L5 Vip expressing cortical GABAergic interneuron (Mus musculus)",
"lbl": "L5 Vip cortical GABAergic interneuron (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand Down Expand Up @@ -92944,7 +92983,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023019",
"lbl": "L5/6 CCK and Vip expressing cortical GABAergic interneuron (Mus musculus)",
"lbl": "L5/6 CCK, Vip cortical GABAergic interneuron (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand Down Expand Up @@ -93082,7 +93121,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023027",
"lbl": "L5 ‘T-shaped’ Martinotti Sst GABAergic cortical interneuron (Mus musculus)",
"lbl": "L5 T-Martinotti Sst GABAergic cortical interneuron (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand Down Expand Up @@ -93439,7 +93478,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023044",
"lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)",
"lbl": "non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand Down Expand Up @@ -93470,7 +93509,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023045",
"lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)",
"lbl": "medulla-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand All @@ -93494,6 +93533,11 @@
"pred": "hasExactSynonym",
"val": "MY ET MOp (Mus)",
"xrefs": []
},
{
"pred": "hasExactSynonym",
"val": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)",
"xrefs": []
}
]
},
Expand Down Expand Up @@ -93771,7 +93815,7 @@
}
],
"definition": {
"val": "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index.",
"val": "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM (ventroanterior-ventrolateral complex/ventromedial nucleus) cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index.",
"xrefs": [
"PMID:20556241",
"PMID:9236245"
Expand Down Expand Up @@ -93873,7 +93917,10 @@
"xrefs": [
"PMID:30715238"
]
}
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
},
Expand Down Expand Up @@ -93960,7 +94007,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/CL_4023071",
"lbl": "L5/6 CCK expressing cortical GABAergic interneuron (Mus musculus)",
"lbl": "L5/6 CCK cortical GABAergic interneuron (Mus musculus)",
"meta": {
"basicPropertyValues": [
{
Expand Down Expand Up @@ -94003,6 +94050,9 @@
"WikipediaVersioned:Martinotti_cell&oldid=9947732"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"xrefs": [
{
"val": "ILX:0107375"
Expand All @@ -94024,6 +94074,9 @@
"val": "http://orcid.org/0000-0001-7258-9596"
}
],
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"xrefs": [
{
"val": "A type of interneuron that has two clusters of dendritic branches that originate directly from the soma and extend in opposite directions and axons that form a plexus which spreads widely. Compared to bipolar neurons, bitufted neurons have branching that occur close to the soma."
Expand Down Expand Up @@ -94138,6 +94191,9 @@
"PMID:15378039"
]
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
],
"synonyms": [
{
"pred": "hasExactSynonym",
Expand Down Expand Up @@ -94294,7 +94350,10 @@
"xrefs": [
"PMID:30715238"
]
}
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
},
Expand All @@ -94313,7 +94372,10 @@
"xrefs": [
"PMID:30715238"
]
}
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
},
Expand All @@ -94332,7 +94394,10 @@
"xrefs": [
"PMID:30715238"
]
}
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
},
Expand All @@ -94351,7 +94416,10 @@
"xrefs": [
"PMID:30715238"
]
}
},
"subsets": [
"http://purl.obolibrary.org/obo/cl#BDS_subset"
]
},
"type": "CLASS"
},
Expand Down Expand Up @@ -95986,6 +96054,17 @@
]
}
},
{
"id": "http://purl.obolibrary.org/obo/RO_0002006",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.org/spar/cito/citesAsAuthority",
"val": "http://www.ncbi.nlm.nih.gov/pubmed/22402613"
}
]
}
},
{
"id": "http://purl.obolibrary.org/obo/RO_0002023",
"meta": {
Expand Down Expand Up @@ -96300,6 +96379,10 @@
{
"pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val": "http://purl.obolibrary.org/obo/cl#defining-property-chains-involving-reflexivity"
},
{
"pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/"
}
]
}
Expand Down Expand Up @@ -96451,6 +96534,10 @@
{
"pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val": "http://purl.obolibrary.org/obo/cl#defining-property-chains-involving-reflexivity"
},
{
"pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/"
}
]
}
Expand Down
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