Skip to content

Commit

Permalink
new releases. Fixes #453 and #455
Browse files Browse the repository at this point in the history
  • Loading branch information
@cmungall
cmungall committed Nov 23, 2016
1 parent 2dd460c commit 08a7a62
Show file tree
Hide file tree
Showing 17 changed files with 15,511 additions and 15,409 deletions.
67 changes: 33 additions & 34 deletions cl-basic.obo
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1657,7 +1657,7 @@ def: "A cell that stores epinephrine secretory vesicles. During times of stress,
synonym: "phaeochromocyte" EXACT []
xref: BTO:0000259
xref: FMA:69263
is_a: CL:0000568 ! APUD cell
is_a: CL:0000568 ! amine precursor uptake and decarboxylation cell

[Term]
id: CL:0000167
Expand Down Expand Up @@ -4013,7 +4013,7 @@ is_a: CL:0000174 ! steroid hormone secreting cell
id: CL:0000457
name: biogenic amine secreting cell
namespace: cell
is_a: CL:0000163 ! endocrine cell
is_a: CL:0000151 ! secretory cell

[Term]
id: CL:0000458
Expand Down Expand Up @@ -4993,10 +4993,10 @@ is_a: CL:0000198 ! pain receptor cell

[Term]
id: CL:0000568
name: APUD cell
name: amine precursor uptake and decarboxylation cell
namespace: cell
def: "A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell." [GOC:tfm, ISBN:0721662544, MESH:A11.070]
synonym: "amine precursor uptake and decarboxylation cell" EXACT []
synonym: "APUD cell" EXACT []
xref: BTO:0003866
xref: FMA:83114
is_a: CL:0000165 ! neuroendocrine cell
Expand Down Expand Up @@ -7752,8 +7752,8 @@ synonym: "5-hydroxytryptamine neuron" EXACT []
synonym: "serotinergic neuron" RELATED []
xref: FBbt:00005133
xref: WBbt:0006837
is_a: CL:0000381 ! neurosecretory neuron
is_a: CL:0000458 ! serotonin secreting cell
is_a: CL:0000540 ! neuron

[Term]
id: CL:0000851
Expand Down Expand Up @@ -12733,7 +12733,7 @@ id: CL:0002250
name: intestinal crypt stem cell
namespace: cell
def: "A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651]
synonym: "stem cell of intestinal crypt of lieberkuhn" EXACT []
synonym: "stem cell of intestinal crypt of Lieberkuhn" EXACT []
xref: FMA:63379
is_a: CL:0000048 ! multi fate stem cell
is_a: CL:0002563 ! intestinal epithelial cell
Expand Down Expand Up @@ -17796,8 +17796,8 @@ is_a: CL:0000163 ! endocrine cell
id: CL:0008025
name: noradrenergic neuron
def: "A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter." [GOC:dos]
is_a: CL:0000381 ! neurosecretory neuron
is_a: CL:0000459 ! noradrenergic cell
is_a: CL:0000540 ! neuron

[Term]
id: CL:0008026
Expand Down Expand Up @@ -18035,9 +18035,8 @@ is_a: CL:0000617 ! GABAergic neuron

[Term]
id: CL:0011006
name: lugaro cell
name: Lugaro cell
def: "An inhibitory GABAergic interneuron found in the cerebellar cortex." [GOC:nv]
synonym: "Lugaro cell" EXACT []
is_a: CL:0000402 ! CNS interneuron
is_a: CL:0011005 ! GABAergic interneuron
is_a: CL:1001611 ! cerebellar neuron
Expand Down Expand Up @@ -18159,7 +18158,7 @@ is_a: CL:0000540 ! neuron
id: CL:0011110
name: histaminergic neuron
def: "Neuron that secretes histamine." [PMID:22677810]
is_a: CL:0000381 ! neurosecretory neuron
is_a: CL:0000540 ! neuron
is_a: CL:0002274 ! histamine secreting cell

[Term]
Expand Down Expand Up @@ -18883,7 +18882,7 @@ is_a: CL:0002254 ! epithelial cell of small intestine

[Term]
id: CL:1000338
name: enterocyte of epithelium of crypt of lieberkuhn of small intestine
name: enterocyte of epithelium of crypt of Lieberkuhn of small intestine
namespace: cell
def: "An enterocyte that is part of the epithelium of crypt of lieberkuhn of small intestine." [GOC:tfm]
xref: FMA:263094
Expand Down Expand Up @@ -18940,7 +18939,7 @@ is_a: CL:1000343 ! paneth cell of epithelium of small intestine

[Term]
id: CL:1000345
name: paneth cell of epithelium of crypt of lieberkuhn of small intestine
name: paneth cell of epithelium of crypt of Lieberkuhn of small intestine
namespace: cell
def: "A Paneth cell that is part of the epithelium of crypt of lieberkuhn of small intestine." [GOC:tfm]
xref: FMA:263108
Expand Down Expand Up @@ -19204,7 +19203,7 @@ is_a: CL:2000046 ! ventricular cardiac muscle cell

[Term]
id: CL:1000376
name: purkinje myocyte of interventricular septum
name: Purkinje myocyte of interventricular septum
namespace: cell
def: "A Purkinje myocyte that is part of the interventricular septum." [GOC:tfm]
xref: FMA:263182
Expand Down Expand Up @@ -19393,7 +19392,7 @@ is_a: CL:2000022 ! cardiac septum native cell

[Term]
id: CL:1000411
name: endothelial cell of peyer's patch
name: endothelial cell of Peyer's patch
namespace: cell
def: "An endothelial cell that is part of the small intestine Peyer's patch." [GOC:tfm]
xref: FMA:67757
Expand Down Expand Up @@ -19700,7 +19699,7 @@ name: epithelial cell of intermediate tubule
namespace: cell
def: "An epithelial cell that is part of the intermediate tubule." [GOC:tfm]
xref: FMA:70980
is_a: CL:1000909 ! kidney loop of henle epithelial cell
is_a: CL:1000909 ! kidney loop of Henle epithelial cell

[Term]
id: CL:1000454
Expand Down Expand Up @@ -19836,7 +19835,7 @@ is_a: CL:1000409 ! myocyte of sinoatrial node

[Term]
id: CL:1000479
name: purkinje myocyte of atrioventricular node
name: Purkinje myocyte of atrioventricular node
namespace: cell
def: "A Purkinje myocyte that is part of the atrioventricular node." [GOC:tfm]
xref: FMA:83386
Expand Down Expand Up @@ -19874,7 +19873,7 @@ is_a: CL:2000022 ! cardiac septum native cell

[Term]
id: CL:1000483
name: purkinje myocyte of internodal tract
name: Purkinje myocyte of internodal tract
namespace: cell
def: "A Purkinje myocyte that is part of the internodal tract." [GOC:tfm]
xref: FMA:83392
Expand All @@ -19883,7 +19882,7 @@ is_a: CL:0002096 ! internodal tract myocyte

[Term]
id: CL:1000484
name: purkinje myocyte of atrioventricular bundle
name: Purkinje myocyte of atrioventricular bundle
namespace: cell
def: "A Purkinje myocyte that is part of the atrioventricular bundle." [GOC:tfm]
xref: FMA:83393
Expand Down Expand Up @@ -20373,7 +20372,7 @@ namespace: cell
xref: KUPO:0001046
is_a: CL:0002306 ! epithelial cell of proximal tubule
is_a: CL:1000616 ! kidney outer medulla cell
is_a: CL:1001021 ! kidney loop of henle descending limb epithelial cell
is_a: CL:1001021 ! kidney loop of Henle descending limb epithelial cell

[Term]
id: CL:1000849
Expand Down Expand Up @@ -20422,7 +20421,7 @@ is_a: CL:1000854 ! kidney blood vessel cell

[Term]
id: CL:1000909
name: kidney loop of henle epithelial cell
name: kidney loop of Henle epithelial cell
namespace: cell
xref: KUPO:0001047
is_a: CL:1000494 ! nephron tubule epithelial cell
Expand Down Expand Up @@ -20463,18 +20462,18 @@ is_a: CL:1000891 ! kidney arterial blood vessel cell

[Term]
id: CL:1001016
name: kidney loop of henle ascending limb epithelial cell
name: kidney loop of Henle ascending limb epithelial cell
namespace: cell
xref: KUPO:0001048
is_a: CL:0002305 ! epithelial cell of distal tubule
is_a: CL:1000909 ! kidney loop of henle epithelial cell
is_a: CL:1000909 ! kidney loop of Henle epithelial cell

[Term]
id: CL:1001021
name: kidney loop of henle descending limb epithelial cell
name: kidney loop of Henle descending limb epithelial cell
namespace: cell
xref: KUPO:0001053
is_a: CL:1000909 ! kidney loop of henle epithelial cell
is_a: CL:1000909 ! kidney loop of Henle epithelial cell

[Term]
id: CL:1001033
Expand Down Expand Up @@ -20570,43 +20569,43 @@ is_a: CL:1001066 ! kidney arteriole smooth muscle cell

[Term]
id: CL:1001106
name: kidney loop of henle thick ascending limb epithelial cell
name: kidney loop of Henle thick ascending limb epithelial cell
namespace: cell
xref: KUPO:0001049
is_a: CL:1000504 ! kidney medulla cell
is_a: CL:1001016 ! kidney loop of henle ascending limb epithelial cell
is_a: CL:1001016 ! kidney loop of Henle ascending limb epithelial cell

[Term]
id: CL:1001107
name: kidney loop of henle thin ascending limb epithelial cell
name: kidney loop of Henle thin ascending limb epithelial cell
namespace: cell
xref: KUPO:0001050
is_a: CL:1000617 ! kidney inner medulla cell
is_a: CL:1001016 ! kidney loop of henle ascending limb epithelial cell
is_a: CL:1001016 ! kidney loop of Henle ascending limb epithelial cell

[Term]
id: CL:1001108
name: kidney loop of henle medullary thick ascending limb epithelial cell
name: kidney loop of Henle medullary thick ascending limb epithelial cell
namespace: cell
xref: KUPO:0001051
is_a: CL:1000616 ! kidney outer medulla cell
is_a: CL:1001106 ! kidney loop of henle thick ascending limb epithelial cell
is_a: CL:1001106 ! kidney loop of Henle thick ascending limb epithelial cell

[Term]
id: CL:1001109
name: kidney loop of henle cortical thick ascending limb epithelial cell
name: kidney loop of Henle cortical thick ascending limb epithelial cell
namespace: cell
xref: KUPO:0001052
is_a: CL:1001106 ! kidney loop of henle thick ascending limb epithelial cell
is_a: CL:1001106 ! kidney loop of Henle thick ascending limb epithelial cell

[Term]
id: CL:1001111
name: kidney loop of henle thin descending limb epithelial cell
name: kidney loop of Henle thin descending limb epithelial cell
namespace: cell
xref: KUPO:0001054
is_a: CL:1000453 ! epithelial cell of intermediate tubule
is_a: CL:1000616 ! kidney outer medulla cell
is_a: CL:1001021 ! kidney loop of henle descending limb epithelial cell
is_a: CL:1001021 ! kidney loop of Henle descending limb epithelial cell

[Term]
id: CL:1001123
Expand Down
Loading

0 comments on commit 08a7a62

Please sign in to comment.