Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update OBA citation info #262

Merged
merged 1 commit into from
Jun 27, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 14 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,8 @@

This repository contains source files for OBA (Ontology of Biological Attributes).

The Ontology of Biological Attributes (OBA) is a formalised, species-independent collection of interoperable phenotypic trait categories that is intended to fulfil a data integration role. OBA is a standardised representational framework for observable attributes that are characteristics of biological entities, organisms, or parts of organisms. It is a collection of biological attributes (traits) covering all kingdoms of life and is interoperable with other ontologies in the [Open Biological and Biomedical Ontologies (OBO) Foundry.](http://obofoundry.org/)

# Useful links

* [Issue tracker](https://github.com/obophenotype/bio-attribute-ontology/issues)
Expand All @@ -21,3 +23,15 @@ OBA is drawn from various different sources:
* OBA terms partially derived from the `regulation of biological quality` branch of the [Gene Ontology (GO)](http://obofoundry.org/ontology/go.html)
* OBA terms generated de novo by curators; for example, for curation of [EOL](http://eol.org) trait data in TraitBank

# Citing OBA

```
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de
Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S,
Matentzoglu N, McMurry JA, Mungall CJ, Munoz-Torres MC, Putman T, Robinson P,
Smedley D, Sollis E, Thessen AE, Vasilevsky N, Walton DO, Osumi-Sutherland D.
The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.
Mamm Genome. 2023 Apr.
```
[doi:10.1007/s00335-023-09992-1](https://doi.org/10.1007/s00335-023-09992-1)
[PMID: 37076585](https://pubmed.ncbi.nlm.nih.gov/37076585/)
18 changes: 15 additions & 3 deletions docs/cite.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,19 @@
# How to cite OBA

See [Zenodo archive](https://zenodo.org/record/6542518) for an up-to-date citation record.
Please cite

```
Chris Mungall et al. (2022). obophenotype/bio-attribute-ontology. Zenodo. https://doi.org/10.5281/zenodo.6542518
```
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de
Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S,
Matentzoglu N, McMurry JA, Mungall CJ, Munoz-Torres MC, Putman T, Robinson P,
Smedley D, Sollis E, Thessen AE, Vasilevsky N, Walton DO, Osumi-Sutherland D.
The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.
Mamm Genome. 2023 Apr.
```
[doi:10.1007/s00335-023-09992-1](https://doi.org/10.1007/s00335-023-09992-1)
[PMID: 37076585](https://pubmed.ncbi.nlm.nih.gov/37076585/)


See also [Zenodo.](https://zenodo.org/badge/latestdoi/13996/obophenotype/bio-attribute-ontology)

).
3 changes: 3 additions & 0 deletions docs/index.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
# OBA - The Ontology of Biological Attributes

The Ontology of Biological Attributes is a tool for data integration. It aims to help researchers find new insights.

Welcome to the OBA online documentation!

# Useful links
Expand All @@ -8,5 +10,6 @@ Welcome to the OBA online documentation!
* [Issue tracker](https://github.com/obophenotype/bio-attribute-ontology/issues)
* [OBO Library Homepage](http://obofoundry.org/ontology/oba.html)
* [Editors guide](editors-guide.md)
* [How to cite OBA](cite.md)

You can find descriptions of the standard ontology engineering workflows (ODK) [here](odk-workflows/index.md).