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Update OBA citation info
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rays22 authored Jun 27, 2023
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14 changes: 14 additions & 0 deletions README.md
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This repository contains source files for OBA (Ontology of Biological Attributes).

The Ontology of Biological Attributes (OBA) is a formalised, species-independent collection of interoperable phenotypic trait categories that is intended to fulfil a data integration role. OBA is a standardised representational framework for observable attributes that are characteristics of biological entities, organisms, or parts of organisms. It is a collection of biological attributes (traits) covering all kingdoms of life and is interoperable with other ontologies in the [Open Biological and Biomedical Ontologies (OBO) Foundry.](http://obofoundry.org/)

# Useful links

* [Issue tracker](https://github.com/obophenotype/bio-attribute-ontology/issues)
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* OBA terms partially derived from the `regulation of biological quality` branch of the [Gene Ontology (GO)](http://obofoundry.org/ontology/go.html)
* OBA terms generated de novo by curators; for example, for curation of [EOL](http://eol.org) trait data in TraitBank

# Citing OBA

```
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de
Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S,
Matentzoglu N, McMurry JA, Mungall CJ, Munoz-Torres MC, Putman T, Robinson P,
Smedley D, Sollis E, Thessen AE, Vasilevsky N, Walton DO, Osumi-Sutherland D.
The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.
Mamm Genome. 2023 Apr.
```
[doi:10.1007/s00335-023-09992-1](https://doi.org/10.1007/s00335-023-09992-1)
[PMID: 37076585](https://pubmed.ncbi.nlm.nih.gov/37076585/)
18 changes: 15 additions & 3 deletions docs/cite.md
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# How to cite OBA

See [Zenodo archive](https://zenodo.org/record/6542518) for an up-to-date citation record.
Please cite

```
Chris Mungall et al. (2022). obophenotype/bio-attribute-ontology. Zenodo. https://doi.org/10.5281/zenodo.6542518
```
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de
Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S,
Matentzoglu N, McMurry JA, Mungall CJ, Munoz-Torres MC, Putman T, Robinson P,
Smedley D, Sollis E, Thessen AE, Vasilevsky N, Walton DO, Osumi-Sutherland D.
The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.
Mamm Genome. 2023 Apr.
```
[doi:10.1007/s00335-023-09992-1](https://doi.org/10.1007/s00335-023-09992-1)
[PMID: 37076585](https://pubmed.ncbi.nlm.nih.gov/37076585/)


See also [Zenodo.](https://zenodo.org/badge/latestdoi/13996/obophenotype/bio-attribute-ontology)

).
3 changes: 3 additions & 0 deletions docs/index.md
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# OBA - The Ontology of Biological Attributes

The Ontology of Biological Attributes is a tool for data integration. It aims to help researchers find new insights.

Welcome to the OBA online documentation!

# Useful links
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* [Issue tracker](https://github.com/obophenotype/bio-attribute-ontology/issues)
* [OBO Library Homepage](http://obofoundry.org/ontology/oba.html)
* [Editors guide](editors-guide.md)
* [How to cite OBA](cite.md)

You can find descriptions of the standard ontology engineering workflows (ODK) [here](odk-workflows/index.md).

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