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Fix duplicate class
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Resolve #300
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@rays22
rays22 committed Nov 17, 2023
1 parent 576f45e commit 4021e20
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Showing 3 changed files with 18 additions and 50 deletions.
41 changes: 4 additions & 37 deletions src/ontology/imports/merged_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-11-16/imports/merged_import.owl>
Annotation(owl:versionInfo "2023-11-16")
<http://purl.obolibrary.org/obo/oba/releases/2023-11-17/imports/merged_import.owl>
Annotation(owl:versionInfo "2023-11-17")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Expand Down Expand Up @@ -24772,9 +24772,6 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002057>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002058>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002062>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002067>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002070>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002071>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002072>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002076>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002078>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002083>))
Expand Down Expand Up @@ -24857,7 +24854,6 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0040060>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045000>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045001>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045002>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045004>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045005>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045008>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0045010>))
Expand Down Expand Up @@ -50389,7 +50385,7 @@ SubObjectPropertyOf(<http://purl.obolibrary.org/obo/GOREL_0002004> <http://purl.
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MONDO_0100332> "disease has primary infectious agent")
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/MONDO_0100332> <http://purl.obolibrary.org/obo/RO_0014001>)

# Object Property: <http://purl.obolibrary.org/obo/RO_0000052> (characteristic of)
# Object Property: <http://purl.obolibrary.org/obo/RO_0000052> (inheres in)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/RO_0000052> "inheres in"@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/RO_0000052> "this fragility is a characteristic of this vase"@en)
Expand Down Expand Up @@ -52858,7 +52854,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0004023> "caus
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0002410>)
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0040035>)

# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease causes disruption of)
# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease disrupts)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0004024> "A relationship between a disease and a process where the disease process disrupts the execution of the process.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/RO_0004024> "disease causes disruption of (disease to process)")
Expand Down Expand Up @@ -249992,27 +249988,6 @@ SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002062> <http://purl.obolibrary
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0002067> "stratification")
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002067> <http://purl.obolibrary.org/obo/PATO_0000060>)

# Class: <http://purl.obolibrary.org/obo/PATO_0002070> (affinity)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0002070> "affinity")
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002070> <http://purl.obolibrary.org/obo/PATO_0002182>)

# Class: <http://purl.obolibrary.org/obo/PATO_0002071> (increased affinity)

AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0002604> <http://purl.obolibrary.org/obo/PATO_0002071> <http://purl.obolibrary.org/obo/PATO_0002072>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0002071> "increased affinity")
EquivalentClasses(<http://purl.obolibrary.org/obo/PATO_0002071> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0015007> <http://purl.obolibrary.org/obo/PATO_0000461>)))
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002071> <http://purl.obolibrary.org/obo/PATO_0002070>)
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002071> <http://purl.obolibrary.org/obo/PATO_0002305>)

# Class: <http://purl.obolibrary.org/obo/PATO_0002072> (decreased affinity)

AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0002604> <http://purl.obolibrary.org/obo/PATO_0002072> <http://purl.obolibrary.org/obo/PATO_0002071>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0002072> "decreased affinity")
EquivalentClasses(<http://purl.obolibrary.org/obo/PATO_0002072> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0015008> <http://purl.obolibrary.org/obo/PATO_0000461>)))
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002072> <http://purl.obolibrary.org/obo/PATO_0002070>)
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0002072> <http://purl.obolibrary.org/obo/PATO_0002303>)

# Class: <http://purl.obolibrary.org/obo/PATO_0002076> (movement behavioral quality)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0002076> "movement behavioral quality")
Expand Down Expand Up @@ -250501,14 +250476,6 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/PATO_0045002> ObjectIntersecti
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0045002> <http://purl.obolibrary.org/obo/PATO_0001842>)
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0045002> <http://purl.obolibrary.org/obo/PATO_0045001>)

# Class: <http://purl.obolibrary.org/obo/PATO_0045004> (normal affinity)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0045004> "An affinity which is relatively normal or average.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0045004> "normal affinity")
EquivalentClasses(<http://purl.obolibrary.org/obo/PATO_0045004> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0015010> <http://purl.obolibrary.org/obo/PATO_0000461>)))
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0045004> <http://purl.obolibrary.org/obo/PATO_0002070>)
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0045004> <http://purl.obolibrary.org/obo/PATO_0045001>)

# Class: <http://purl.obolibrary.org/obo/PATO_0045005> (normal age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0045005> "An age which is relatively normal or average.")
Expand Down
2 changes: 1 addition & 1 deletion src/patterns/data/default/entity_attribute.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -4360,7 +4360,7 @@ OBA:2045414 UBERON:0001088 urine PATO:0000957 opacity https://orcid.org/0000-
OBA:2045415 UBERON:0001088 urine PATO:0002027 osmolality https://orcid.org/0000-0001-8314-2140
OBA:2045416 synovial fluid attribute UBERON:0001090 synovial fluid PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045417 UBERON:0001090 synovial fluid PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140
OBA:2045418 cerebrospinal fluid attribute UBERON:0001359 cerebrospinal fluid PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045418 appearance of cerebrospinal fluid UBERON:0001359 cerebrospinal fluid PATO:0001300 optical quality https://orcid.org/0000-0001-8314-2140
OBA:2045419 UBERON:0001359 cerebrospinal fluid PATO:0000014 color https://orcid.org/0000-0001-8314-2140
OBA:2045420 UBERON:0001417 skin of neck PATO:0000915 thickness https://orcid.org/0000-0001-8314-2140
OBA:2045421 semen attribute UBERON:0001968 semen PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
Expand Down
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