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mattfidler committed Jul 6, 2023
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137 changes: 23 additions & 114 deletions docs/advanced-miscellaneous-topics.html
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93 changes: 1 addition & 92 deletions docs/events.html
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Expand Up @@ -652,98 +652,7 @@ <h2><span class="header-section-number">7.1</span> rxode2 event tables<a href="e
<span id="cb38-24"><a href="events.html#cb38-24" aria-hidden="true"></a> d<span class="op">/</span><span class="kw">dt</span>(eff) =<span class="st"> </span>Kin <span class="op">-</span><span class="st"> </span>Kout<span class="op">*</span>(<span class="dv">1</span><span class="op">-</span>C2<span class="op">/</span>(EC50<span class="op">+</span>C2))<span class="op">*</span>eff;</span>
<span id="cb38-25"><a href="events.html#cb38-25" aria-hidden="true"></a> <span class="kw">eff</span>(<span class="dv">0</span>) =<span class="st"> </span><span class="dv">1</span></span>
<span id="cb38-26"><a href="events.html#cb38-26" aria-hidden="true"></a>});</span></code></pre></div>
<pre><code>#&gt; using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0’
#&gt; In file included from /usr/share/R/include/R.h:71,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:8,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /usr/share/R/include/R_ext/Complex.h:80:6: warning: ISO C99 doesn’t support unnamed structs/unions [-Wpedantic]
#&gt; 80 | };
#&gt; | ^
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:78:18: warning: redefinition of typedef ‘t_F’ [-Wpedantic]
#&gt; 78 | typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y);
#&gt; | ^~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:276:18: note: previous declaration of ‘t_F’ with type ‘t_F’ {aka ‘double (*)(int, int, double, double, double *)’}
#&gt; 276 | typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y);
#&gt; | ^~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:79:18: warning: redefinition of typedef ‘t_LAG’ [-Wpedantic]
#&gt; 79 | typedef double (*t_LAG)(int _cSub, int _cmt, double t);
#&gt; | ^~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:277:18: note: previous declaration of ‘t_LAG’ with type ‘t_LAG’ {aka ‘double (*)(int, int, double)’}
#&gt; 277 | typedef double (*t_LAG)(int _cSub, int _cmt, double t);
#&gt; | ^~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:80:18: warning: redefinition of typedef ‘t_RATE’ [-Wpedantic]
#&gt; 80 | typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t);
#&gt; | ^~~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:278:18: note: previous declaration of ‘t_RATE’ with type ‘t_RATE’ {aka ‘double (*)(int, int, double, double)’}
#&gt; 278 | typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t);
#&gt; | ^~~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:81:18: warning: redefinition of typedef ‘t_DUR’ [-Wpedantic]
#&gt; 81 | typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t);
#&gt; | ^~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:279:18: note: previous declaration of ‘t_DUR’ with type ‘t_DUR’ {aka ‘double (*)(int, int, double, double)’}
#&gt; 279 | typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t);
#&gt; | ^~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:83:16: warning: redefinition of typedef ‘t_calc_mtime’ [-Wpedantic]
#&gt; 83 | typedef void (*t_calc_mtime)(int cSub, double *mtime);
#&gt; | ^~~~~~~~~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:281:16: note: previous declaration of ‘t_calc_mtime’ with type ‘t_calc_mtime’ {aka ‘void (*)(int, double *)’}
#&gt; 281 | typedef void (*t_calc_mtime)(int cSub, double *mtime);
#&gt; | ^~~~~~~~~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:85:16: warning: redefinition of typedef ‘t_ME’ [-Wpedantic]
#&gt; 85 | typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__);
#&gt; | ^~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:283:16: note: previous declaration of ‘t_ME’ with type ‘t_ME’ {aka ‘void (*)(int, double, double, double *, const double *)’}
#&gt; 283 | typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__);
#&gt; | ^~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:86:16: warning: redefinition of typedef ‘t_IndF’ [-Wpedantic]
#&gt; 86 | typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat);
#&gt; | ^~~~~~
#&gt; In file included from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parse.h:52,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2/include/rxode2.h:13,
#&gt; from /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2_model_shared.h:3,
#&gt; from rx_b034b2bc2fd84907f5047fb9562a81dc_.c:115:
#&gt; /home/matt/R/x86_64-pc-linux-gnu-library/4.3/rxode2parse/include/rxode2parseStruct.h:284:16: note: previous declaration of ‘t_IndF’ with type ‘t_IndF’ {aka ‘void (*)(int, double, double, double *)’}
#&gt; 284 | typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat);
#&gt; | ^~~~~~</code></pre>
<pre><code>#&gt; using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0’</code></pre>
</div>
<div id="bolusadditive-doses" class="section level2 hasAnchor" number="7.2">
<h2><span class="header-section-number">7.2</span> Bolus/Additive Doses<a href="events.html#bolusadditive-doses" class="anchor-section" aria-label="Anchor link to header"></a></h2>
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