refactor: Keep container directives for offline download

seqeralabs/wave#323
nf-core · Aug 8, 2024 · 4e91740 · 4e91740
1 parent 7ead8da
commit 4e91740
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/modules/nf-core/bowtie/align/main.nf b/modules/nf-core/bowtie/align/main.nf
@@ -3,7 +3,9 @@ process BOWTIE_ALIGN {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container "nf-core/modules/bowtie:bowtie-1.3.0_samtools-1.16.1--2c2a8138b83d6d1d"
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'nf-core/modules/bowtie:bowtie-1.3.0_samtools-1.16.1--2c2a8138b83d6d1d' :
+        'nf-core/modules/bowtie:bowtie-1.3.0_samtools-1.16.1--82705d624eee2198' }"
 
     input:
     tuple val(meta), path(reads)