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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 229 52

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 47 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 51 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 14 1

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 17 4

Repositories

Showing 10 of 234 repositories
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 15 BSD-3-Clause 4 16 0 Updated Oct 4, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Jupyter Notebook 4 MIT 1 33 4 Updated Oct 4, 2024
  • alliance-disease-association-ingest Public
    monarch-initiative/alliance-disease-association-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Oct 3, 2024
  • cookiecutter-monarch-ingest Public

    A Cruft cookiecutter for modular Koza ingests

    monarch-initiative/cookiecutter-monarch-ingest’s past year of commit activity
    Python 2 1 3 0 Updated Oct 3, 2024
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 47 BSD-3-Clause 4 28 (1 issue needs help) 3 Updated Oct 3, 2024
  • kboom Public

    Bayes OWL Ontology Merging

    monarch-initiative/kboom’s past year of commit activity
    Java 21 1 1 9 Updated Oct 3, 2024
  • PhenoteFX Public

    PhenoteFX

    monarch-initiative/PhenoteFX’s past year of commit activity
    Java 4 BSD-3-Clause 1 0 1 Updated Oct 3, 2024
  • curategpt Public

    LLM-driven curation assist tool (pre-alpha)

    monarch-initiative/curategpt’s past year of commit activity
    Jupyter Notebook 58 BSD-3-Clause 11 20 5 Updated Oct 3, 2024
  • pyphetools Public

    Python Phenopacket Tools

    monarch-initiative/pyphetools’s past year of commit activity
    Python 10 MIT 1 4 0 Updated Oct 3, 2024
  • babelon Public

    A format for language profiles for ontologies

    monarch-initiative/babelon’s past year of commit activity
    Jupyter Notebook 8 MIT 0 15 1 Updated Oct 3, 2024
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