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create new msa_alignment subworkflow #35

create new msa_alignment subworkflow

create new msa_alignment subworkflow #35

Triggered via pull request July 12, 2024 14:57
Status Failure
Total duration 31m 35s
Artifacts

test.yml

on: pull_request
nf-test-changes
22s
nf-test-changes
prettier
7s
prettier
editorconfig
7s
editorconfig
pre-commit
10s
pre-commit
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: nf-test
confirm-pass
0s
confirm-pass
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11 errors and 51 warnings
nf-core-lint-modules (msa_alignment)
Process completed with exit code 1.
nf-test (modules/nf-class/pigz/compress, docker)
Process completed with exit code 1.
nf-test (modules/nf-class/pigz/compress, conda)
Process completed with exit code 1.
nf-test (modules/nf-class/pigz/compress, singularity)
Process completed with exit code 1.
nf-test (modules/nf-class/untar, conda)
Process completed with exit code 1.
nf-test (subworkflows/nf-class/msa_alignment, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
nf-test (subworkflows/nf-class/msa_alignment, conda)
The operation was canceled.
nf-test (subworkflows/nf-class/msa_alignment, singularity)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
nf-test (subworkflows/nf-class/msa_alignment, singularity)
The operation was canceled.
nf-test (subworkflows/nf-class/msa_alignment, docker)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test (modules/nf-class/clustalo/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/clustalo/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/clustalo/guidetree, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/clustalo/guidetree, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/clustalo/treealign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/clustalo/treealign, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/famsa/guidetree, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/famsa/guidetree, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/famsa/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/famsa/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/famsa/treealign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/famsa/treealign, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/kalign/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/kalign/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/mafft, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/mafft, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/magus/treealign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/magus/treealign, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/magus/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/magus/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/mtmalign/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/mtmalign/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/pigz/compress, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/pigz/compress, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/muscle5/super5, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/muscle5/super5, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/learnmsa/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/learnmsa/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/structurealign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/structurealign, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/irmsd, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/irmsd, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/seqreformat, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/seqreformat, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/magus/guidetree, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/magus/guidetree, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/untar, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/untar, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/alncompare, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/alncompare, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/align, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (subworkflows/nf-class/msa_alignment, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (subworkflows/nf-class/msa_alignment, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/libalign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/libalign, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/treealign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/treealign, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/nf-class/tcoffee/tcs, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/nf-class/tcoffee/tcs, singularity)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/