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MiXCR v1.7
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@dbolotin dbolotin released this 29 Dec 09:58
· 3788 commits to develop since this release
v1.7
0225715
Major changes
  • New feature (#8 and #36) that allows to extract actual reads that were used in each clone (for more details see documentation)
  • Import of custom gene segment sequences (mixcr importSegments ...)
  • Automated import of IMGT refenrence segment sequences (mixcr importFromIMGT ...)
  • Beta feature: new aligner with support of big gaps (see "New aligner" section in documentation).
  • Added new action exportReads which export initial reads aggregated by each clones to separate .fastq files
  • Added new export options for exportAlignments: -cloneId (prints clone ID that aggregated corresponding alignment) and -mapping (same, with additional info on mapping type)
  • Added new export option for exportClones: -mapping will pring all alignment IDs that were aggreafated by clone
  • Added option -n (print only first n rows) to all export commands
  • Added new assembler option: minimal clonal sequence length (-OminimalClonalSequenceLength=...)
Minor changes
  • minor improvements and bug fixes
  • version information embedded into jar file (try mixcr -v)

Update 13.01.2016: micro fix for importFromIMGT.sh script (see 10f7c87)

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