Merge pull request #1215 from milaboratory/milib-upgrade

MiLib upgrade
milaboratory · Jun 30, 2023 · d5df2a5 · d5df2a5
2 parents b0128a7 + 4b5207a
commit d5df2a5
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Showing 6 changed files with 311 additions and 311 deletions.
diff --git a/build.gradle.kts b/build.gradle.kts
@@ -131,7 +131,7 @@ val toObfuscate: Configuration by configurations.creating {
 val obfuscationLibs: Configuration by configurations.creating
 
 val mixcrAlgoVersion = "4.3.0-215-tiny-things"
-val milibVersion = ""
+val milibVersion = "3.0.0-1-master"
 val mitoolVersion = ""
 val repseqioVersion = ""
 

diff --git a/itests/case008.sh b/itests/case008.sh
@@ -29,9 +29,9 @@ mixcr analyze --verbose generic-amplicon \
   CD4M1_test_R1.fastq.gz CD4M1_test_R2.fastq.gz case8
 
 assert "cat case8.align.report.json | head -n 1 | jq -r .chainUsage.chains.TRA.total" "241323"
-assert "cat case8.assemble.report.json | head -n 1 | jq -r .readsInClones" "200728"
+assert "cat case8.assemble.report.json | head -n 1 | jq -r .readsInClones" "200727"
 assert "cat case8.assemble.report.json | head -n 1 | jq -r .clones" "25656"
 assert "cat case8.assembleContigs.report.json | head -n 1 | jq -r .longestContigLength" "498"
-assert "cat case8.assembleContigs.report.json | head -n 1 | jq -r .clonesWithAmbiguousLetters" "3570"
+assert "cat case8.assembleContigs.report.json | head -n 1 | jq -r .clonesWithAmbiguousLetters" "3576"
 assert "cat case8.assembleContigs.report.json | head -n 1 | jq -r .assemblePrematureTerminationEvents" "4"
 assert "cat case8.assembleContigs.report.json | head -n 1 | jq -r .finalCloneCount" "25656"
diff --git a/itests/case009.sh b/itests/case009.sh
@@ -30,8 +30,8 @@ mixcr analyze --verbose generic-amplicon \
   CD4M1_test_R1.fastq.gz CD4M1_test_R2.fastq.gz case9
 
 assert "cat case9.align.report.json | head -n 1 | jq -r .chainUsage.chains.TRA.total" "241323"
-assert "cat case9.assemble.report.json | head -n 1 | jq -r .readsInClones" "200728"
+assert "cat case9.assemble.report.json | head -n 1 | jq -r .readsInClones" "200727"
 assert "cat case9.assembleContigs.report.json | head -n 1 | jq -r .longestContigLength" "498"
-assert "cat case9.assembleContigs.report.json | head -n 1 | jq -r .clonesWithAmbiguousLetters" "3570"
+assert "cat case9.assembleContigs.report.json | head -n 1 | jq -r .clonesWithAmbiguousLetters" "3576"
 assert "cat case9.assembleContigs.report.json | head -n 1 | jq -r .assemblePrematureTerminationEvents" "4"
 assert "cat case9.assembleContigs.report.json | head -n 1 | jq -r .finalCloneCount" "25656"