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Add sphinx read the docs, organizational docs #1144

Add sphinx read the docs, organizational docs

Add sphinx read the docs, organizational docs #1144

Workflow file for this run

name: Tests
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
tests:
name: Run regression tests
runs-on: ubuntu-latest
steps:
- name: Checkout code
uses: actions/checkout@v2
with:
submodules: recursive
- name: Set system to non-interactive mode
run: export DEBIAN_FRONTEND=noninteractive
- name: Install dependencies
run: |
sudo apt-get update -qq
sudo apt-get install -qq --no-install-recommends tzdata
sudo apt-get install -qq git
sudo apt-get install -qq make cmake g++
sudo apt-get install -qq libopenmpi-dev libhdf5-openmpi-dev
sudo apt-get install -qq openssh-client
sudo apt-get install -qq python3 python3-numpy python3-h5py python3-matplotlib
- name: Run test scripts
run: |
cd tst/regression
mkdir build_minkowski_release
cd build_minkowski_release
cmake -DCMAKE_BUILD_TYPE=Release -DPHOEBUS_ENABLE_UNIT_TESTS=ON -DMAX_NUMBER_CONSERVED_VARS=10 -DPHOEBUS_GEOMETRY=Minkowski -DPHOEBUS_CACHE_GEOMETRY=ON -DPARTHENON_DISABLE_HDF5_COMPRESSION=ON ../../../
cmake --build . --parallel 8
cd ..
mkdir build_fmks_release
cd build_fmks_release
cmake -DCMAKE_BUILD_TYPE=Release -DPHOEBUS_ENABLE_UNIT_TESTS=ON -DMAX_NUMBER_CONSERVED_VARS=10 -DPHOEBUS_GEOMETRY=FMKS -DPHOEBUS_CACHE_GEOMETRY=ON -DPARTHENON_DISABLE_HDF5_COMPRESSION=ON ../../../
cmake --build . --parallel 8
cd ..
mkdir build_minkowski_debug
cd build_minkowski_debug
cmake -DCMAKE_BUILD_TYPE=Debug -DPHOEBUS_ENABLE_UNIT_TESTS=ON -DMAX_NUMBER_CONSERVED_VARS=10 -DPHOEBUS_GEOMETRY=Minkowski -DPHOEBUS_CACHE_GEOMETRY=ON -DPARTHENON_DISABLE_HDF5_COMPRESSION=ON ../../../
cmake --build . --parallel 8
cd ..
mkdir build_fmks_debug
cd build_fmks_debug
cmake -DCMAKE_BUILD_TYPE=Debug -DPHOEBUS_ENABLE_UNIT_TESTS=ON -DMAX_NUMBER_CONSERVED_VARS=10 -DPHOEBUS_GEOMETRY=FMKS -DPHOEBUS_CACHE_GEOMETRY=ON -DPARTHENON_DISABLE_HDF5_COMPRESSION=ON ../../../
cmake --build . --parallel 8
cd ..
# is there a run directory that shouldn't be here?
rm -rf run
# TODO(BRR) add --use_gpu flag here if running on GPU
# Release suite
./radiation_diffusion.py --executable build_minkowski_release/src/phoebus
./mocmc_diffusion.py --executable build_minkowski_release/src/phoebus
./radiation_equilibration.py --executable build_minkowski_release/src/phoebus
./mocmc_equilibration.py --executable build_minkowski_release/src/phoebus
./bondi.py --executable build_fmks_release/src/phoebus
./linear_modes.py --executable build_minkowski_release/src/phoebus
./thincooling.py --executable build_minkowski_release/src/phoebus
./thincooling_coolingfunction.py --executable build_minkowski_release/src/phoebus
# Debug suite
./radiation_diffusion.py --executable build_minkowski_debug/src/phoebus
./mocmc_diffusion.py --executable build_minkowski_debug/src/phoebus
./radiation_equilibration.py --executable build_minkowski_debug/src/phoebus
./mocmc_equilibration.py --executable build_minkowski_debug/src/phoebus
./bondi.py --executable build_fmks_debug/src/phoebus
./linear_modes.py --executable build_minkowski_debug/src/phoebus
./thincooling.py --executable build_minkowski_debug/src/phoebus
./thincooling_coolingfunction.py --executable build_minkowski_debug/src/phoebus
# Custom builds
./friedmann.py
- name: Build code for unit testing
run: |
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release -DPHOEBUS_ENABLE_UNIT_TESTS=ON -DMAX_NUMBER_CONSERVED_VARS=10 -DPHOEBUS_GEOMETRY=Minkowski -DPHOEBUS_CACHE_GEOMETRY=ON -DPARTHENON_DISABLE_HDF5_COMPRESSION=ON ../
cmake --build . --parallel 4
- name: Run unit tests
run: |
cd build
ctest