Update test_astrocyte.dat and astrocyte_model_implementation.ipynb du…

…e to change in delta_IP3 default
heplesser · Aug 26, 2024 · f62ddac · f62ddac
1 parent a53ce91
commit f62ddac
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Showing 2 changed files with 903 additions and 903 deletions.
diff --git a/doc/htmldoc/model_details/astrocyte_model_implementation.ipynb b/doc/htmldoc/model_details/astrocyte_model_implementation.ipynb
@@ -170,7 +170,7 @@
     "    y[0, 1] = 1.0\n",
     "    y[0, 2] = 1.0\n",
     "    fos = []  # full output dict from odeint()\n",
-    "    delta_ip3 = 5.0  # parameter determining the increase in IP3 induced by synaptic input\n",
+    "    delta_ip3 = p.delta_IP3  # parameter determining the increase in IP3 induced by synaptic input\n",
     "\n",
     "    # update time-step by time-step\n",
     "    for k in range(1, n):\n",
@@ -211,7 +211,7 @@
     "    \"Kd_IP3_2\": 0.9434,\n",
     "    \"Km_SERCA\": 0.1,\n",
     "    \"ratio_ER_cyt\": 0.185,\n",
-    "    \"delta_IP3\": 5.0,\n",
+    "    \"delta_IP3\": 0.0002,\n",
     "    \"k_IP3R\": 0.0002,\n",
     "    \"rate_L\": 0.00011,\n",
     "    \"tau_IP3\": 7142.0,\n",
@@ -318,7 +318,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.10"
+   "version": "3.12.1"
   }
  },
  "nbformat": 4,