Ensure that problematic amino acid identification works for pVACsplice

griffithlab · Apr 16, 2024 · 475ee12 · 475ee12
1 parent 4630954
commit 475ee12
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pvactools/lib/identify_problematic_amino_acids.py b/pvactools/lib/identify_problematic_amino_acids.py
@@ -23,7 +23,7 @@ def execute(self):
                 writer = csv.DictWriter(output_fh, delimiter = "\t", fieldnames=reader.fieldnames, extrasaction='ignore', restval='NA')
             writer.writeheader()
             for line in reader:
-                if self.file_type == 'pVACbind' or self.file_type == 'pVACfuse':
+                if self.file_type == 'pVACbind' or self.file_type == 'pVACfuse' or self.file_type == 'pVACsplice':
                     sequence = line['Epitope Seq']
                 else:
                     sequence = line['MT Epitope Seq']