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Cram support #609

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Cram support #609

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Commits on Mar 19, 2019

  1. initial test of cram support

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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  2. fix scatter

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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  3. fix typos

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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  4. fixed another typo

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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  5. forgot the -T prefix for samtools

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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  6. removed uneccessary file

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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  7. bumped java heap space

    @zlskidmore
    zlskidmore committed Mar 19, 2019
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