updated gatk docker to 4.2.0.0 (#60)

gatk-workflows · Mar 30, 2021 · 4d8130f · 4d8130f
1 parent 34ae610
commit 4d8130f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/haplotypecaller-gvcf-gatk4.wdl b/haplotypecaller-gvcf-gatk4.wdl
@@ -39,7 +39,7 @@ workflow HaplotypeCallerGvcf_GATK4 {
 
     Boolean make_gvcf = true
     Boolean make_bamout = false
-    String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.1.9.0"
+    String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.2.0.0"
     String gatk_path = "/gatk/gatk"
     String gitc_docker = "us.gcr.io/broad-gotc-prod/genomes-in-the-cloud:2.4.7-1603303710"
     String samtools_path = "samtools"