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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 630 367

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 300 75

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 291 73

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 251 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 142 88

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 110 19

Repositories

Showing 10 of 176 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 78 MIT 7 79 6 Updated Oct 3, 2024
  • sparse_dot Public

    Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

    flatironinstitute/sparse_dot’s past year of commit activity
    Python 73 MIT 10 2 0 Updated Oct 3, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 42 Apache-2.0 6 51 1 Updated Oct 3, 2024
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 0 0 0 Updated Oct 3, 2024
  • Sommerfeld Public

    Codes for layered dielectric media

    flatironinstitute/Sommerfeld’s past year of commit activity
    Fortran 0 Apache-2.0 0 0 0 Updated Oct 2, 2024
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 5 Apache-2.0 1 14 2 Updated Oct 2, 2024
  • FlatironMDCourse Public

    Flatiron Institute MD Course

    flatironinstitute/FlatironMDCourse’s past year of commit activity
    0 MIT 0 0 0 Updated Oct 2, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 77 34 2 0 Updated Oct 2, 2024
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Oct 1, 2024
  • sciware_awful_cp Public

    Example of a small package that won't work with the system libstdc++

    flatironinstitute/sciware_awful_cp’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 1, 2024
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