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FHCRC Computational Biology

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  1. seqmagick seqmagick Public

    An imagemagick-like frontend to Biopython SeqIO

    Python 114 22

  2. taxtastic taxtastic Public

    Create and maintain phylogenetic "reference packages" of biological sequences.

    Python 22 10

  3. nestly nestly Public

    Make and use nested directory trees corresponding to combinatorial choices of parameters

    Python 21 2

  4. ampliconnoise ampliconnoise Public

    A python front end for Chris Quince's AmpliconNoise c code

    C 6

  5. mcl mcl Public

    Graph clustering by flow simulation

    C 6

  6. microbiome-demo microbiome-demo Public

    Demonstration files and scripts for our high-throughput sequencing analysis pipeline

    Shell 5

Repositories

Showing 10 of 12 repositories
  • yapp Public

    Yet another pplacer pipeline

    fhcrc/yapp’s past year of commit activity
    Python 0 0 4 2 Updated Oct 31, 2024
  • deenurp Public

    16S rRNA gene sequence curation and phylogenetic reference set creation

    fhcrc/deenurp’s past year of commit activity
    Python 4 GPL-3.0 3 20 1 Updated Sep 19, 2024
  • taxtastic Public

    Create and maintain phylogenetic "reference packages" of biological sequences.

    fhcrc/taxtastic’s past year of commit activity
    Python 22 GPL-3.0 10 6 0 Updated Sep 12, 2024
  • seqmagick Public

    An imagemagick-like frontend to Biopython SeqIO

    fhcrc/seqmagick’s past year of commit activity
    Python 114 GPL-3.0 22 15 1 Updated Mar 18, 2024
  • nestly Public

    Make and use nested directory trees corresponding to combinatorial choices of parameters

    fhcrc/nestly’s past year of commit activity
    Python 21 MIT 2 5 0 Updated Apr 23, 2017
  • ampliconnoise Public

    A python front end for Chris Quince's AmpliconNoise c code

    fhcrc/ampliconnoise’s past year of commit activity
    C 6 GPL-3.0 0 1 0 Updated Jul 2, 2015
  • biopy Public

    Automatically exported from code.google.com/p/biopy

    fhcrc/biopy’s past year of commit activity
    Python 1 0 0 0 Updated Mar 14, 2015
  • prepdrm Public

    Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

    fhcrc/prepdrm’s past year of commit activity
    C 0 GPL-3.0 0 0 0 Updated Jun 30, 2014
  • mutgen Public

    Generate mutations under a motif based mutation model

    fhcrc/mutgen’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jun 19, 2014
  • mcl Public

    Graph clustering by flow simulation

    fhcrc/mcl’s past year of commit activity
    C 6 0 0 0 Updated May 12, 2014

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