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Script that will create the clean folder with cleaned notebooks #3

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Created a script that uses one of Jeremy's tools: clean.py

clean.py updated to create the destination folder ("clean")

README updated to include instructions to run the script

using Jeremy's clean tool the script will clean all the notebooks in the root folder, and output them into the `clean` folder. the README has also been updated with instructions on how to run this command.

added functionality to create `clean` directory to the clean tool
README now includes instructions for how to create the `clean` folder

clean.py now creates a folder called `clean`
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