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version: 2.1 | ||
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jobs: | ||
build: | ||
docker: | ||
- image: cimg/base:current | ||
user: root | ||
steps: | ||
- checkout | ||
|
||
- run: | ||
name: Setup micromamba | ||
shell: /bin/bash -l | ||
command: | | ||
apt update --yes && apt-get upgrade --yes | ||
apt install -y --no-install-recommends wget ca-certificates git | ||
cd $HOME | ||
cd ${HOME} | ||
curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj bin/micromamba | ||
eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
PYTHON_VERSION="<< parameters.python-version >>" | ||
sed -i "s/python>=/c python=${PYTHON_VERSION}" environment.yml | ||
micromamba create -f environment.yml | ||
- run: | ||
name: Setup environment | ||
name: Install raider and Check environment | ||
shell: /bin/bash -l | ||
command: | | ||
eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
micromamba create -f environment.yml | ||
micromamba activate RAiDER | ||
pip install coveralls | ||
echo url: https://cds.climate.copernicus.eu/api/v2 > $HOME/.cdsapirc | ||
echo key: $cdsak >> $HOME/.cdsapirc | ||
echo { > $HOME/.ecmwfapirc | ||
echo ' "url": "https://api.ecmwf.int/v1",' >> $HOME/.ecmwfapirc | ||
echo ' "email": "'$ecmwfu'",' >> $HOME/.ecmwfapirc | ||
echo ' "key": "'$ecmwfk'"' >> $HOME/.ecmwfapirc | ||
echo } >> $HOME/.ecmwfapirc | ||
echo url: $NCUMloc > $HOME/.ncmrlogin | ||
echo username: $NCUMu >> $HOME/.ncmrlogin | ||
echo password: $NCUMp >> $HOME/.ncmrlogin | ||
python -m pip install --no-deps . | ||
python -c "import RAiDER; from RAiDER.delay import tropo_delay" | ||
python -c "import RAiDER; from RAiDER.interpolator import interp_along_axis" | ||
python --version | ||
python -c "import numpy; print(numpy.__version__)" | ||
python -c "import pyproj; print(pyproj.__version__)" | ||
- run: | ||
name: Install RAiDER and test the install | ||
name: Setup data stores | ||
shell: /bin/bash -l | ||
command: | | ||
eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
micromamba activate RAiDER | ||
python -m pip install . | ||
python -c "import RAiDER; from RAiDER.delay import tropo_delay" | ||
python -c "import RAiDER; from RAiDER.interpolator import interp_along_axis" | ||
python -c 'from RAiDER.models.credentials import setup_from_env; setup_from_env()' | ||
- run: | ||
name: Run unit tests | ||
shell: /bin/bash -l | ||
command: | | ||
eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
micromamba activate RAiDER | ||
COV_OPTIONS=`python -c "import importlib;print(*(' --cov='+p for p in importlib.util.find_spec('RAiDER').submodule_search_locations))"` | ||
pytest -m "not long" test/ $COV_OPTIONS --cov-report= | ||
- run: | ||
name: Report coverage | ||
shell: /bin/bash -l | ||
command: | | ||
eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
micromamba activate RAiDER | ||
python .circleci/fix_coverage_paths.py .coverage $(pwd)/tools/RAiDER/ | ||
coverage report -mi | ||
coveralls | ||
PYTHON_VERSION="<< parameters.python-version >>" | ||
if [ "${PYTHON_VERSION}" == "3.12" ]; then | ||
eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
micromamba activate RAiDER | ||
python -m pip install coveralls | ||
python .circleci/fix_coverage_paths.py .coverage $(pwd)/tools/RAiDER/ | ||
coverage report -mi | ||
coveralls | ||
fi | ||
workflows: | ||
all-tests: | ||
jobs: | ||
- build: | ||
matrix: | ||
parameters: | ||
python-version: ["3.9", "3.10", "3.11", "3.12"] |