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docs: add bioconda badges to README (#6)
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clintval authored Jul 28, 2024
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4 changes: 2 additions & 2 deletions README.md
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# neodisambiguate

<!-- [![Install with bioconda](https://img.shields.io/badge/Install%20with-bioconda-brightgreen.svg)](http://bioconda.github.io/recipes/neodisambiguate/README.html) -->
<!-- [![Anaconda Version](https://anaconda.org/bioconda/neodisambiguate/badges/version.svg)](http://bioconda.github.io/recipes/neodisambiguate/README.html) -->
[![Install with bioconda](https://img.shields.io/badge/Install%20with-bioconda-brightgreen.svg)](http://bioconda.github.io/recipes/neodisambiguate/README.html)
[![Anaconda Version](https://anaconda.org/bioconda/neodisambiguate/badges/version.svg)](http://bioconda.github.io/recipes/neodisambiguate/README.html)
[![Unit Tests](https://github.com/clintval/neodisambiguate/actions/workflows/unit-tests.yml/badge.svg?branch=main)](https://github.com/clintval/neodisambiguate/actions/workflows/unit-tests.yml?query=branch%3Amain)
[![Java Version](https://img.shields.io/badge/java-8,11,17,21-c22d40.svg)](https://github.com/AdoptOpenJDK/homebrew-openjdk)
[![Language](https://img.shields.io/badge/language-scala-c22d40.svg)](https://www.scala-lang.org/)
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3 changes: 1 addition & 2 deletions neodisambiguate/src/io/cvbio/neodisambiguate/bam/Bams.scala
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Expand Up @@ -6,13 +6,12 @@ import com.fulcrumgenomics.bam.Template
import com.fulcrumgenomics.bam.api.SamSource
import com.fulcrumgenomics.commons.CommonsDef.SafelyClosable
import com.fulcrumgenomics.commons.collection.SelfClosingIterator
import com.fulcrumgenomics.commons.util.LazyLogging
import enumeratum.EnumEntry
import io.cvbio.neodisambiguate.CommonsDef.SamTag
import io.cvbio.neodisambiguate.bam.Bams.ReadOrdinal.{Read1, Read2}

/** Common methods for working with SAM/BAM files. */
object Bams extends LazyLogging {
object Bams {

/** Implicit class that makes working with a [[Template]] easier. */
implicit class TemplateUtil(private val template: Template) {
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