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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 133 46

Repositories

Showing 10 of 104 repositories
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 133 Apache-2.0 46 31 (3 issues need help) 5 Updated Dec 23, 2024
  • SCICoNE Public

    Single-cell copy number calling and event history reconstruction.

    cbg-ethz/SCICoNE’s past year of commit activity
    C++ 20 GPL-3.0 7 7 (1 issue needs help) 0 Updated Dec 21, 2024
  • pMHN Public

    Personalised mutual hazard networks: fixed effects in cancer progression modeling

    cbg-ethz/pMHN’s past year of commit activity
    Python 3 MIT 0 1 0 Updated Dec 20, 2024
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 5 (1 issue needs help) 2 Updated Dec 20, 2024
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 1 3 1 Updated Dec 19, 2024
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 17, 2024
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 2 Updated Dec 13, 2024
  • GSoD-2024 Public

    Google Season of Docs 2024

    cbg-ethz/GSoD-2024’s past year of commit activity
    1 0 0 0 Updated Dec 10, 2024
  • CTC-SCITE Public

    Computational method and analyses to study the clonality of circulating tumor cell clusters

    cbg-ethz/CTC-SCITE’s past year of commit activity
    C++ 2 GPL-3.0 1 3 0 Updated Dec 10, 2024
  • bmi Public

    Mutual information estimators and benchmark

    cbg-ethz/bmi’s past year of commit activity
    Python 39 MIT 6 9 2 Updated Dec 5, 2024
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