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VS-1009 Add SCORE to VQSR Lite VCF #8423

Merged
merged 17 commits into from
Jul 20, 2023
Merged

VS-1009 Add SCORE to VQSR Lite VCF #8423

merged 17 commits into from
Jul 20, 2023

Commits on Jul 14, 2023

  1. Add the VQSR Lite field 'SCORE' to the data model 

    - Pull it from the VCFs exported from VQSR Lite and store it in the model
    @gbggrant
    gbggrant committed Jul 14, 2023
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Commits on Jul 17, 2023

  1. Add code to put SCORE in the extracted VCF

    @gbggrant
    gbggrant committed Jul 17, 2023
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Commits on Jul 18, 2023

  1. Getting it wired through properly.

    @gbggrant
    gbggrant committed Jul 18, 2023
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  2. Pass the gatk_override to VQSRClassic wdl why dontcha?

    @gbggrant
    gbggrant committed Jul 18, 2023
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  3. Fix score implementation for VQSR Classic

    @gbggrant
    gbggrant committed Jul 18, 2023
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Commits on Jul 19, 2023

  1. Update truth for integration test to include VQSR Lite VCFs with 'SCO… 

    …RE' field in them
    @gbggrant
    gbggrant committed Jul 19, 2023
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  2. Just a stupid comment

    @gbggrant
    gbggrant committed Jul 19, 2023
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  3. Fix compilation error in a test.

    @gbggrant
    gbggrant committed Jul 19, 2023
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  4. Update VQSR Lite avro file and test data to include SCORE field.

    @gbggrant
    gbggrant committed Jul 19, 2023
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  5. A little clean up

    @gbggrant
    gbggrant committed Jul 19, 2023
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  6. Updated dockers and override jar

    @gbggrant
    gbggrant committed Jul 19, 2023
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Commits on Jul 20, 2023

  1. Fix bug.

    @gbggrant
    gbggrant committed Jul 20, 2023
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  2. Update the docker and override jar for the bug fix.

    @gbggrant
    gbggrant committed Jul 20, 2023
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  3. A little clean up

    @gbggrant
    gbggrant committed Jul 20, 2023
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  4. Fix a test.

    @gbggrant
    gbggrant committed Jul 20, 2023
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  5. Updated dockers and override jar

    @gbggrant
    gbggrant committed Jul 20, 2023
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  6. Clean up .dockstore.yml Update to release docker tags.

    @gbggrant
    gbggrant committed Jul 20, 2023
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