Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Free up space on github actions runners for all jobs. #8386

Merged
merged 5 commits into from
Jun 28, 2023
Merged

Free up space on github actions runners for all jobs. #8386

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
8ec8ce2
Free up space on github actions runners for all jobs.
cmnbroad Jun 27, 2023
99ea4be
Add purge-runner-disk as a github action.
cmnbroad Jun 27, 2023
14a6bab
Order matters.
cmnbroad Jun 27, 2023
6a24cf0
Specify a shell.
cmnbroad Jun 27, 2023
f43870a
Also use the correct order.
cmnbroad Jun 27, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 12 additions & 0 deletions .github/actions/purge-runner-disk/action.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
name: 'purge-runner-disk'
description: 'Free up space on the runner image to prevent out-of-space errors during CI tests'
runs:
using: "composite"
steps:
#Reclaim some disk space on the runner to prevent the WDL tasks from running out of space on the docker.
#https://github.com/actions/runner-images/issues/2840
- name: Reclaim some runner disk space
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
shell: bash
14 changes: 8 additions & 6 deletions .github/workflows/gatk-tests.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -42,6 +42,8 @@ jobs:
- name: checkout gatk
uses: actions/checkout@v3

- uses: ./.github/actions/purge-runner-disk

- name: Extract metadata (tags, labels) for Docker
id: meta
uses: docker/metadata-action@v4
Expand Down Expand Up @@ -87,6 +89,7 @@ jobs:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: 'Set up java ${{ matrix.Java }}'
uses: actions/setup-java@v3
with:
Expand Down Expand Up @@ -161,6 +164,8 @@ jobs:
with:
fetch-depth: 0 #TODO make this shallow

- uses: ./.github/actions/purge-runner-disk

- name: 'Set up java ${{ matrix.Java }}'
uses: actions/setup-java@v3
with:
Expand Down Expand Up @@ -250,6 +255,7 @@ jobs:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: Set up java 17
uses: actions/setup-java@v3
with:
Expand All @@ -270,6 +276,7 @@ jobs:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: Set up java 17
uses: actions/setup-java@v3
with:
Expand All @@ -292,15 +299,10 @@ jobs:
continue-on-error: true
name: WDL test ${{ matrix.wdlTest }} on cromwell
steps:
#Reclaim some disk space on the runner to prevent the WDL tasks from running out of space on the docker.
#https://stackoverflow.com/questions/75536771/github-runner-out-of-disk-space-after-building-docker-image
- name: Reclaim some runner disk space
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: ./.github/actions/purge-runner-disk
- name: pull lfs files
run: git lfs pull
- name: Set up java 17
Expand Down