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GVS walker to master [VS-964] #8355

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wants to merge 11 commits into from
Closed

GVS walker to master [VS-964] #8355

wants to merge 11 commits into from

Commits on Jul 5, 2023

  1. copy over required files from ah_var_store

    @mcovarr
    mcovarr committed Jul 5, 2023
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  2. attempt to resolve ReferenceConfidenceVariantContextMerger conflicts

    @mcovarr
    mcovarr committed Jul 5, 2023
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  3. Fix reference reference

    @mcovarr
    mcovarr committed Jul 5, 2023
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  4. Annotation adjustments for ExtractTool

    @mcovarr
    mcovarr committed Jul 5, 2023
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  5. Call new mergeWithRemapping method

    @mcovarr
    mcovarr committed Jul 5, 2023
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  6. Adapt for Avro 1.11 behavior of throwing on get()s of non-existent fi… 

    …elds [VS-860]
    @mcovarr
    mcovarr committed Jul 5, 2023
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  7. non clp vcf extract tests

    @mcovarr
    mcovarr committed Jul 5, 2023
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  8. clp vcf extract test

    @mcovarr
    mcovarr committed Jul 5, 2023
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  9. fix imports

    @mcovarr
    mcovarr committed Jul 5, 2023
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  10. VS-942. Fix an error where NO variants were found (#8388) 

    * Fix a bug where there were NO variants in a range.
    @gbggrant @mcovarr
    gbggrant authored and mcovarr committed Jul 5, 2023
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  11. BigQuery storage v1beta2 to v1 [VS-1001] (#8399)

    @mcovarr
    mcovarr committed Jul 5, 2023
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